View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_86 (Length: 371)
Name: NF1404_low_86
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 355
Target Start/End: Original strand, 6109546 - 6109871
Alignment:
| Q |
30 |
agaattggatctagggttaactcgacaaatgtaagagtgaaaacgctgaagatataggagtgatgaatggcaatggcgcggcaaaatgttttggcgggag |
129 |
Q |
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| T |
6109546 |
agaattggatctagggttaactcgacaaatgtaagagtgaaaacgctgaagatataggagtgatgaatggcaatggcgcggcaatatgttttggcgggag |
6109645 |
T |
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| Q |
130 |
gnnnnnnnnnnnnnnatgtaagaaaaagacggcggacccgttataacatggcaaatcatgatttgaatcttggttattggagaagtgttaacgtttagcg |
229 |
Q |
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| T |
6109646 |
gtttttttgctttttatgtaagaaaaagacggcggacccgttataacacggcaaatcatgatttgaatcttggttgtcggagaagtgttaacgtttagcg |
6109745 |
T |
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| Q |
230 |
ctagtctttaagggtgacgattacatccattaattaatcataacttatatacgagatgagatatatgcgaaagaaatgctgagatatagtaatgatgaat |
329 |
Q |
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| T |
6109746 |
ctagtctttaagggtgccgatcacatccattaattaatcataacttatatacgagatgagatatatgcgaaagaaatgcttagatatagtaatgatgaat |
6109845 |
T |
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| Q |
330 |
gacatagtaaatttgttttggggaga |
355 |
Q |
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| T |
6109846 |
gatatagtcaatttgttttggggaga |
6109871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 330
Target Start/End: Original strand, 6109901 - 6110066
Alignment:
| Q |
169 |
gttataacatggcaaatcatgatttgaatcttggttattggagaagtgttaacgtttagcgctagtc-tttaagggtgacgattacatccat---taatt |
264 |
Q |
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| T |
6109901 |
gttataacgtggcaaatcatgattcacatcttggttgtcggagaggtgttaacttttagtgctagtcttttaagggtggcattttcatttattagtaatt |
6110000 |
T |
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| Q |
265 |
aatcataacttatatacgagatgagatatatgcgaaagaaatgctgagatatagtaatgatgaatg |
330 |
Q |
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| T |
6110001 |
catcttatcttatatacgagatgagatatgtgagagagacatgttgagatatagtaacaatgaatg |
6110066 |
T |
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