View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_low_87 (Length: 368)
Name: NF1404_low_87
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_87 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 36153962 - 36154317
Alignment:
| Q |
1 |
ttctatcagaaactgcacctttctgacaaaacattgcacctaattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36153962 |
ttctatcagaaactgcacctttctgacaaaacattgcacctaattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccct |
36154061 |
T |
|
| Q |
101 |
cttcctccacaacaacatcaagcaataataagcattagtatactctaccaccatttccaaacaaaaccaaaaacatgaaaaatatgatgcaacaatctct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154062 |
cttcctccacagcaacatcaagcaataataagcattagtatactctatcaccatttccaaacaaaaccaaaaacatgaaaaatatgatgcaacaatctct |
36154161 |
T |
|
| Q |
201 |
catttccacctcattctttcttctagcaattgctttctacactcctaccactttagcccaactctcaccaattcaaaccccatcaacatcatcaccctca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154162 |
catttccacctcattctttcttctagcaattgctttctacactcctaccactttagcccaactctcaccaattcaaaccccatcaacatcatcaccctca |
36154261 |
T |
|
| Q |
301 |
ccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36154262 |
ccacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagc |
36154317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 36150588 - 36150931
Alignment:
| Q |
17 |
acctttctgacaaaacattgcacctaattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacaacaac |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36150588 |
acctttctgataaaacattgcacctaattaaccaatcattaatttccatctccctaaactataaaagccaaccctttctcccctcttcctccacaacacc |
36150687 |
T |
|
| Q |
117 |
atcaagcaataataagcattagtatactctaccaccatttccaa----ac------aaaaccaaaaacatgaaaaatatgatgcaacaatctctcatttc |
206 |
Q |
| |
|
| ||||||| || | |||| | || | | || |||||||| || ||||||||||| ||| ||||||||||| || ||||||||||| |
|
|
| T |
36150688 |
accaagcaacaacacacatttgaattc----ctacaatttccaacaacacttagtaaaaaccaaaaa--tgaggaatatgatgcagcagtctctcatttc |
36150781 |
T |
|
| Q |
207 |
cacctcattctttcttctagcaattgctttctacactcctaccactttagcccaactctcaccaattcaaaccccatcaacatcatcaccctcaccaccc |
306 |
Q |
| |
|
|||||||||| ||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| |
|
|
| T |
36150782 |
cacctcattccttctttttgcaattactttttacacctccaccactttagcccaactctcaccaattcaatccccaacaacatcatctccatcaccaccc |
36150881 |
T |
|
| Q |
307 |
ttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagc |
356 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36150882 |
ttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagc |
36150931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University