View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_88 (Length: 367)
Name: NF1404_low_88
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 43 - 352
Target Start/End: Complemental strand, 7980735 - 7980425
Alignment:
| Q |
43 |
aaaaattaagttcaaacaaacattattttctatattctatcggaccatattaatgtccataagtacaactgttagatattaggatcactatttatagtga |
142 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7980735 |
aaaagttaagttcaaacaaacattattttctctattctatcggaccatattaatgtccataagtacaactgttagatattaggattactatttatagtga |
7980636 |
T |
|
| Q |
143 |
tcattcattcatttgttaa-aacttcatcatattaaaaatttcaaaatttcttggaatttgctatgctttctcaacaaagatatatgagctaccatccac |
241 |
Q |
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|||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7980635 |
tcatacattcatttgtaatcaacttcttcatattaaaaatttcaaaatttcttggactttgctatgctttctcaacaaagatatatgagctaccatccac |
7980536 |
T |
|
| Q |
242 |
cttgagcagataaatcatcttcattatattcctagaaaattcagttttatgtgtttgtttgaaaagatttgagagtttcttgttttctttggtacttcca |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7980535 |
cttgagcagataaatcatcttcattatattcctagaaaattcagttttatgtgtttgtttgaaaagatttgagagtttcttgttttctttggtacttcca |
7980436 |
T |
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| Q |
342 |
agcatttgcat |
352 |
Q |
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||||||||||| |
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| T |
7980435 |
agcatttgcat |
7980425 |
T |
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