View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_90 (Length: 364)
Name: NF1404_low_90
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 42599097 - 42599411
Alignment:
| Q |
8 |
caccacagaccaacagtaacgaattgtgtattcgcacatattcttaaaggtctgcaaaccatagcatatggtggttgcccaccaactgtttgcagaggtc |
107 |
Q |
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| T |
42599097 |
caccacaaaccaagagtaacgaattgcgtattcgcacatattcttaaaggtctgcaaaccatagcatatggtggttgcccaccaactgtttgcagaggtc |
42599196 |
T |
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| Q |
108 |
cacgatatatacgaatagacaatggggagcttgaatgcacgttcttctccaacgagcttgaatcttttccgacaaagttatgattccgtcgagtttagaa |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
42599197 |
cacgatatata-gaatagacaatggggagcttgaatgcacgttcttctccgacgagcttgaatcttttccgacaaagttatgattccatcgagtttggaa |
42599295 |
T |
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| Q |
208 |
atcaattaccggtgatgcggtgactaaatgaataaagaaacattgtagnnnnnnnnnctctttctatatttgtttttggccgaatatcatcgatcattga |
307 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42599296 |
atcagttaccggtgatgcggtgagtgaatgaataaagaaacattgtagaaaaaaaagctctttctatatttgtttttggacgaatatcatcgatcattga |
42599395 |
T |
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| Q |
308 |
taataagggtttaacg |
323 |
Q |
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|||||||| ||||||| |
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| T |
42599396 |
taataaggttttaacg |
42599411 |
T |
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