View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_low_91 (Length: 364)
Name: NF1404_low_91
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_91 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 2672310 - 2672630
Alignment:
| Q |
29 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2672310 |
atcataaccatcttttaagcttgatataaaatcatgagcatttgaagcctttgatgcctctataatctcactctcatcaaccgtatcatcataagctcca |
2672409 |
T |
|
| Q |
129 |
tatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgt |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2672410 |
tatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgtctttatgt |
2672509 |
T |
|
| Q |
229 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2672510 |
ctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatgattgtcgattttccagaaccactttcccctaccaaagc |
2672609 |
T |
|
| Q |
329 |
cgtcgattttcctgcatcaat |
349 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2672610 |
cgttgattttcctgcatcaat |
2672630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 2596494 - 2596814
Alignment:
| Q |
29 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
128 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2596494 |
atcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctcca |
2596593 |
T |
|
| Q |
129 |
tatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgt |
228 |
Q |
| |
|
||| |||||||||| ||||||||| || ||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2596594 |
tatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattatatgtctttatgt |
2596693 |
T |
|
| Q |
229 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596694 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctataattgtcgattttccagaaccactttcccctaccaaagc |
2596793 |
T |
|
| Q |
329 |
cgtcgattttcctgcatcaat |
349 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2596794 |
cgtcgattttcctgcatcaat |
2596814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 2568935 - 2569255
Alignment:
| Q |
29 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2568935 |
atcataaccatcttttaagcttgatataaaatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctcca |
2569034 |
T |
|
| Q |
129 |
tatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||||||||||||||| |
|
|
| T |
2569035 |
tatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgtctttatgt |
2569134 |
T |
|
| Q |
229 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagc |
328 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2569135 |
ctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatgattgttgattttccagaaccactttcccctaccaaagc |
2569234 |
T |
|
| Q |
329 |
cgtcgattttcctgcatcaat |
349 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
2569235 |
tgtcgattttccagcatcaat |
2569255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 2440389 - 2440069
Alignment:
| Q |
29 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
128 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2440389 |
atcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctcca |
2440290 |
T |
|
| Q |
129 |
tatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgt |
228 |
Q |
| |
|
||| |||||||||| |||||||||| || ||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||| || ||||||| |
|
|
| T |
2440289 |
tatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattataagtttttatgt |
2440190 |
T |
|
| Q |
229 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagc |
328 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2440189 |
ctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatgattgtcgattttccagaaccactttccccaaccaaagc |
2440090 |
T |
|
| Q |
329 |
cgtcgattttcctgcatcaat |
349 |
Q |
| |
|
||| |||||||| || ||||| |
|
|
| T |
2440089 |
cgttgattttccggcgtcaat |
2440069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 2623878 - 2623560
Alignment:
| Q |
30 |
tcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctccat |
129 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | ||||| |
|
|
| T |
2623878 |
tcatatccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactctcatcaacctgatcaccatatgatccat |
2623779 |
T |
|
| Q |
130 |
atgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgtc |
229 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||| || |||||||| |
|
|
| T |
2623778 |
atgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattataagtttttatgtc |
2623679 |
T |
|
| Q |
230 |
tctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagcc |
329 |
Q |
| |
|
||| || ||||||||||||||||||| || |||||||||||| || |||||||||| ||| || || ||||| ||||||||||||| |||||||| ||| |
|
|
| T |
2623678 |
tctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccacttttccctaccagagct |
2623579 |
T |
|
| Q |
330 |
gtcgattttcctgcatcaa |
348 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
2623578 |
gtcgattttccagcatcaa |
2623560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 2592335 - 2592015
Alignment:
| Q |
29 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
128 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||| |
|
|
| T |
2592335 |
atcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactttcatcaaccttatcatcatatgatcca |
2592236 |
T |
|
| Q |
129 |
tatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgt |
228 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||| | ||| || |||||||| | ||||||| |
|
|
| T |
2592235 |
tatgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagattataaatttttatgt |
2592136 |
T |
|
| Q |
229 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagc |
328 |
Q |
| |
|
| ||||| |||||||||||||||||||||| |||||||||||| || |||||||||| ||| || || ||||| |||||||||||||| |||||||| || |
|
|
| T |
2592135 |
ccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactttctcctaccaacgc |
2592036 |
T |
|
| Q |
329 |
cgtcgattttcctgcatcaat |
349 |
Q |
| |
|
|| |||||||| |||||||| |
|
|
| T |
2592035 |
tgttgattttccggcatcaat |
2592015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 29 - 340
Target Start/End: Original strand, 2641150 - 2641461
Alignment:
| Q |
29 |
atcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctcca |
128 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2641150 |
atcataaccatcttgtaagcttgatatgaaatcatgagcatttgcagcctttgatgcctgaataatctcactctcatcaactttatcatcataggctccg |
2641249 |
T |
|
| Q |
129 |
tatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgt |
228 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||| ||||||||||||| || || || |||||||| | |||||| | |
|
|
| T |
2641250 |
tatgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagattataagactttatat |
2641349 |
T |
|
| Q |
229 |
ctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagc |
328 |
Q |
| |
|
|| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||| ||||| || |||||||||||||| |||||||| |
|
|
| T |
2641350 |
cttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatgattgttgatttccctgaaccactttccccgaccaaagc |
2641449 |
T |
|
| Q |
329 |
cgtcgattttcc |
340 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2641450 |
cgtcgattttcc |
2641461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 30 - 337
Target Start/End: Complemental strand, 2451110 - 2450806
Alignment:
| Q |
30 |
tcatatccatcttttaagcttgatataaaatcatgagcatttgcagcctttgatgcctctataatctcactctcatcaaccttatcatcataagctccat |
129 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2451110 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgctccat |
2451014 |
T |
|
| Q |
130 |
atgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtctttatgtc |
229 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||| |||||||||||||| ||| || ||||| ||||| || |||||||| | |||||| || |
|
|
| T |
2451013 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagactttatatc |
2450914 |
T |
|
| Q |
230 |
tctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctaccaaagcc |
329 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2450913 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatgattgtcgattttccagaaccactttccccgaccaaagcc |
2450814 |
T |
|
| Q |
330 |
gtcgattt |
337 |
Q |
| |
|
|| ||||| |
|
|
| T |
2450813 |
gttgattt |
2450806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 349
Target Start/End: Original strand, 17870445 - 17870669
Alignment:
| Q |
125 |
tccatatgcaatattttcccttatggtactactaaacaatgttggttcttgactcacaaggccaatgtgtttcctcaatgatctgagattatatgtcttt |
224 |
Q |
| |
|
|||||||||||| || || |||||||| | | | | ||||||||||||||| |||||||| | |||||||| || | ||| | || ||||||| ||| |
|
|
| T |
17870445 |
tccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttt |
17870544 |
T |
|
| Q |
225 |
atgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctttcaattagtcttataattgtcgattttccagaaccactttcccctacca |
324 |
Q |
| |
|
|||| | |||| || |||||||| | ||||| | ||||||||||||||| || |||| || ||| || || ||||| ||||| || |||| ||| || | |
|
|
| T |
17870545 |
atgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatgatggttgatttgccagacccgctttgccccacta |
17870644 |
T |
|
| Q |
325 |
aagccgtcgattttcctgcatcaat |
349 |
Q |
| |
|
| ||||||||||| ||||| ||||| |
|
|
| T |
17870645 |
atgccgtcgatttccctgcttcaat |
17870669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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