View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_94 (Length: 356)
Name: NF1404_low_94
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 50277934 - 50277735
Alignment:
| Q |
12 |
caaaatattaaaacaattaatgtcttttaattgaattgaatgtaatttatactttcattaaattccttctttgtcaatattttcatttcacnnnnnnnnn |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50277934 |
caaaataataaaacaattaatgtcttttaattgaattgaatgtaatttatactttcattaaattccttctttgtcaatattttcatttcacttttttttt |
50277835 |
T |
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| Q |
112 |
-atcatattcaggcatgtgtttggtgcaaagtctaacaatgtcactgttgttgcacgtaacttgcagtatggaacattcaacagtgtaataatctccccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50277834 |
tatcatattcaggcatgtgtttggtgcaaagtctaacaatgtcactgttgttgcaagtaacttgcagtatggaacattcaacagtgtaataatctccccc |
50277735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 50289602 - 50289403
Alignment:
| Q |
12 |
caaaatattaaaacaattaatgtcttttaattgaattgaatgtaatttatactttcattaaattccttctttgtcaatattttcatttcacnnnnnnnnn |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289602 |
caaaataataaaacaattaatgtcttttaattgaattgaatgtaatttatactttcattaaattccttctttgtcaatattttcatttcacttttttttt |
50289503 |
T |
|
| Q |
112 |
-atcatattcaggcatgtgtttggtgcaaagtctaacaatgtcactgttgttgcacgtaacttgcagtatggaacattcaacagtgtaataatctccccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289502 |
tatcatattcaggcatgtgtttggtgcaaagtctaacaatgtcactgttgttgcaagtaacttgcagtatggaacattcaacagtgtaataatctccccc |
50289403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 50277695 - 50277606
Alignment:
| Q |
232 |
agttttgtgtaaaactaacagccttatctgattcaatgttgtgtattgtatagaacattggttcagcttcttcttcaggcatggcagata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50277695 |
agttttgtgtaaaactaacagccttatctgattcaatgttgtgtattgtatagaacattggttcagcttcttcttcaggcatggcagata |
50277606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 50281719 - 50281630
Alignment:
| Q |
232 |
agttttgtgtaaaactaacagccttatctgattcaatgttgtgtattgtatagaacattggttcagcttcttcttcaggcatggcagata |
321 |
Q |
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| T |
50281719 |
agttttgtgtaaaactaacagccttatctgattcaatgttgtgtattgtatagaacattggttcagcttcttcttcaggcatggcagata |
50281630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 50289363 - 50289274
Alignment:
| Q |
232 |
agttttgtgtaaaactaacagccttatctgattcaatgttgtgtattgtatagaacattggttcagcttcttcttcaggcatggcagata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289363 |
agttttgtgtaaaactaacagccttatctgattcaatgttgtgtattgtatagaacattggttcagcttcttcttcaggcatggcagata |
50289274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 39137987 - 39137953
Alignment:
| Q |
11 |
acaaaatattaaaacaattaatgtcttttaattga |
45 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
39137987 |
acaaaataataaaacaattaatgtcttttaattga |
39137953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 33707514 - 33707480
Alignment:
| Q |
11 |
acaaaatattaaaacaattaatgtcttttaattga |
45 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
33707514 |
acaaaataataaaacaattaatgtcttttaattga |
33707480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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