View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_96 (Length: 349)
Name: NF1404_low_96
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_96 |
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| [»] scaffold0573 (1 HSPs) |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0573 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 93 - 265
Target Start/End: Original strand, 9946 - 10118
Alignment:
| Q |
93 |
atgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaacaaatcgaccccttccc |
192 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
9946 |
atgttcagccattgcttctccatacgttccttcttctgaccatctcacaattgaagggtcaacgtcataaaagattggccaaacaaatcgtccccttcca |
10045 |
T |
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| Q |
193 |
tttatgcatttaaggatatgacaaagttcgtctaaacaaaaggatgaagttgcataatccggagacagaacaa |
265 |
Q |
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| T |
10046 |
tgtatgcatttaaggatatgacaaagttcgtctaaacaaaaggacgaagttgcataactcggagagagaacaa |
10118 |
T |
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Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 93 - 265
Target Start/End: Complemental strand, 28899848 - 28899676
Alignment:
| Q |
93 |
atgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaacaaatcgaccccttccc |
192 |
Q |
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| T |
28899848 |
atgttcagccattgcttctccatacgttccttcttctgaccatctcacaattgaagggtcaacgtcataaaagattggccaaacaaatcgtccccttcca |
28899749 |
T |
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| Q |
193 |
tttatgcatttaaggatatgacaaagttcgtctaaacaaaaggatgaagttgcataatccggagacagaacaa |
265 |
Q |
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| T |
28899748 |
tgtatgcatttaaggatatgacaaagttcgtctaaacaaaaggacgaagttgcataactcggagagagaacaa |
28899676 |
T |
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Target: scaffold0007 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 30189 - 30005
Alignment:
| Q |
93 |
atgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaacaaatcgaccccttccc |
192 |
Q |
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||||| |||||||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30189 |
atgttcagccattgcttctccataagtg---tcttctaaccatctcacttttgaagggtcaacttcataaaagattggccaaacaaatccaccccttccc |
30093 |
T |
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| Q |
193 |
tttatgcatttaaggatatgacaaagttcgtctaaacaaaaggatgaagttgcataatccggagacagaacaacgattgctgcctttg |
280 |
Q |
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| T |
30092 |
tctatgcatttaaggatatgacaaagttcgtctaaacaaaaagatgaagttgcataactcggagagagaacaacaatggccgcctttg |
30005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 65773 - 65589
Alignment:
| Q |
93 |
atgtttagccattgcttctccatacgttccttcttctgaccacctcacaattgaagggtcaacttcataaaagattggccaaacaaatcgaccccttccc |
192 |
Q |
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|||||||||||||||||||||||| | ||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
65773 |
atgtttagccattgcttctccataactc---tcttccaaccatctcacatgtgaaggttcaacttcataaaagattggccaaacaaatcgaccccttccc |
65677 |
T |
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| Q |
193 |
tttatgcatttaaggatatgacaaagttcgtctaaacaaaaggatgaagttgcataatccggagacagaacaacgattgctgcctttg |
280 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| || || ||||||| |
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| T |
65676 |
tttatgcatttaagaatatgacaaagttcgtctaaacaaaaagatgaagttgcataactcggagagagaacaacaatggccgcctttg |
65589 |
T |
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