View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_low_99 (Length: 342)
Name: NF1404_low_99
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_low_99 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 26258960 - 26259234
Alignment:
| Q |
10 |
ccacagacgcaggcgttggttgtggcggcggagcagcttaagaagaaggagagtgagtgggagagtatggaagctgaaattgaagcggaattcaaagcta |
109 |
Q |
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| T |
26258960 |
ccacagacgcaggcgttggttgtggcggcggagcagcttaagaagaaggagagtgagtgggagagtatggaagctgaaattgaagcggaattcaaagcta |
26259059 |
T |
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| Q |
110 |
ttagatctcgtgatgcgaatgctcatgttgttcctactcattgtggttaggatctgatcttcatatctcagaaccctaatttgattgcgttttatttttg |
209 |
Q |
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| T |
26259060 |
ttagatctcgtgatgcgaatgctcatgttgttcctactcattgtggttaggatctgatcttcatatctcagaaccctaatttgattgcgttttgtttttg |
26259159 |
T |
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| Q |
210 |
gacttaaattcag--nnnnnnnnnnncctttcttgttgatgtgaatcaatagtttatgtggttgttgttagctct |
282 |
Q |
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| T |
26259160 |
gacttaaattcagtttttttttttttcctttcttgttgatgtgaatgaatagtttatgtgattgttgttagctct |
26259234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 146877 - 146991
Alignment:
| Q |
88 |
attgaagcggaattcaaagctattagatctcgtgatgcgaatgctcatgttgttcctactcattgtggttaggatctgatcttcatatctcagaacccta |
187 |
Q |
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||||||| |||||||||||| | ||||||| ||||||| || |||||||||||| || ||||| | |||||||||||||||| ||||||||||||||| |
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| T |
146877 |
attgaagtggaattcaaagcaagtagatctggtgatgctaaatctcatgttgttcttattcattattgttaggatctgatcttgctatctcagaacccta |
146976 |
T |
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| Q |
188 |
atttgattgcgtttt |
202 |
Q |
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| T |
146977 |
atttgtttgagtttt |
146991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 144607 - 144657
Alignment:
| Q |
34 |
gcggcggagcagcttaagaagaaggagagtgagtgggagagtatggaagct |
84 |
Q |
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| T |
144607 |
gcggcggagcagcttaaggggaaggagagtgagtgggagaatatggaagct |
144657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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