View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14050_high_1 (Length: 663)
Name: NF14050_high_1
Description: NF14050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14050_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 228 - 647
Target Start/End: Original strand, 2486401 - 2486819
Alignment:
| Q |
228 |
aaatgtgtagacttgtaaagataaaatgtaagaaaaagatggagataaataaacacatatggtgtcgcctacagtgtctgtattttgatctagcaaataa |
327 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2486401 |
aaatgtgtagacttgtaaggataaaatgtaagaaaaagatggagataaataaacacat-tggtgtcgcctaccgtgtctgtattttgatctagcaaataa |
2486499 |
T |
|
| Q |
328 |
taatgacaactagcaaatcataatgtttaatctctaattgattttattaacacgattcaatattggttctgataagatctttctcattgtatttatcatg |
427 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486500 |
taatgacgactagcaaatcataatgtttgatctctaattgattttattaacacgattcaatattggttctgataagatctttctcattgtatttatcatg |
2486599 |
T |
|
| Q |
428 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486600 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
2486699 |
T |
|
| Q |
528 |
gactattctgctctcgggaccagccggttagtctgaatttggtagtttataatcagggattgataagcttttatgtttctactgattccttgaagctaat |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486700 |
gactattctgctctcgggaccagccggttagtctgaatttggtagtttataatgagggattgataagcttttatgtttctactgattccttgaagctaat |
2486799 |
T |
|
| Q |
628 |
tcaaaacttcccctgttcat |
647 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2486800 |
tcaaaacttcccctgttcat |
2486819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 2486174 - 2486340
Alignment:
| Q |
1 |
ctattttccatgatacatgcatgcgaatttgtttagtttccggttcatttgtagtaataaccatattaataaagatctcattctcattgactgttttctt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486174 |
ctattttccatcatacatgcatgcgaatttgtttagtttccggtacatttgtagtaataaccatattaataaagatctcattctcattgactgttttctt |
2486273 |
T |
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| Q |
101 |
aattacatggttgctgtatgacatacatttgtattcatattattattcgtataaaggaaaccatata |
167 |
Q |
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| T |
2486274 |
aattacatggttgctgtatgacatacatttgtattcatattattattcgtataaagcaaaccatata |
2486340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 559
Target Start/End: Complemental strand, 41594955 - 41594824
Alignment:
| Q |
428 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
527 |
Q |
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||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||| | |
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| T |
41594955 |
acagtgagcagacgcgggttttgcttacaagtgctgcatatgttcatttaaagcatgctgaagtttctaaatatacgcgtaatcttgctcctgctagcag |
41594856 |
T |
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| Q |
528 |
gactattctgctctcgggaccagccggttagt |
559 |
Q |
| |
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|||||||| ||||| || || || ||||||| |
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|
| T |
41594855 |
aactattcttctctctggccctgctggttagt |
41594824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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