View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14050_high_4 (Length: 270)
Name: NF14050_high_4
Description: NF14050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14050_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 50 - 251
Target Start/End: Complemental strand, 45836529 - 45836324
Alignment:
| Q |
50 |
tgatcattcaattataatctaccaactagcttataagtataatgaatcgaaagaaataata---cttatagtatgtcagcattcaaattttagaataata |
146 |
Q |
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| T |
45836529 |
tgattattcaattataatctaccaactagcttataattataatgaatcgaaagaaataataatactaatagtatgtcagcattcaaagtttagaataata |
45836430 |
T |
|
| Q |
147 |
agggtaaagtgggatatttaagtgcagggcaaaagtggtaat-acataataacaaagcaaataacgatccttaacagtggttaccaacgaacgaagacgt |
245 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45836429 |
agggtaaagtgggatatttaagtgaagggcaaaagtggtactaacataataacaaagcaaataacgatccttaacagtggttaccaacgaacgaagacgt |
45836330 |
T |
|
| Q |
246 |
gaaatg |
251 |
Q |
| |
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|||||| |
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| T |
45836329 |
gaaatg |
45836324 |
T |
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