View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14050_low_2 (Length: 537)

Name: NF14050_low_2
Description: NF14050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14050_low_2
NF14050_low_2
[»] chr5 (7 HSPs)
chr5 (14-518)||(32558534-32559039)
chr5 (29-166)||(32739369-32739506)
chr5 (14-90)||(32762351-32762427)
chr5 (14-128)||(28474179-28474287)
chr5 (14-75)||(32660846-32660907)
chr5 (59-128)||(32656784-32656854)
chr5 (14-70)||(32662621-32662677)
[»] chr1 (3 HSPs)
chr1 (14-155)||(17582792-17582930)
chr1 (19-155)||(17590689-17590832)
chr1 (172-260)||(17590540-17590629)
[»] chr7 (3 HSPs)
chr7 (28-160)||(7970574-7970706)
chr7 (63-142)||(37576412-37576493)
chr7 (361-437)||(37576157-37576230)
[»] chr2 (1 HSPs)
chr2 (32-90)||(16751831-16751889)


Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 14 - 518
Target Start/End: Original strand, 32558534 - 32559039
Alignment:
Q  14 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaaggcttgttagcatgtcgtgcaatca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32558534 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaagtaagagatttctttgcaaggcttgttagcatgtcgtgcaatca 32558633  T
Q  114 aaagtataaccaacacaa--ctaatcattctcaaatttttcttcttaaagtctatttcgaagtttagggaagccatacaagaagttcatactgtacacat 211  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558634 aaagtataaccaacacaaaactaatcattctcaaatttttcttcttaaagtctatttcgaagtttagggaagccatacaagaagttcatactgtacacat 32558733  T
Q  212 aaaagtttaaaaattgaaggttatacaaaactaaagacattcataattaatattcaaacccaatgtaaagtaaataagtattggcctccatggcttactc 311  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558734 aaaagttcaaaaattgaaggttatacaaaactaaagacattcataattaatattcaaacccaatgtaaagtaaataagtattggcctccatggcttactc 32558833  T
Q  312 atctgagcatttaaaataaacaaaattgattccttaaacataatccaaccacttattcatcatcaccatcatcatgctcattctcttcactactagtcct 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558834 atctgagcatttaaaataaacaaaattgattccttaaacataatccaaccacttattcatcatcaccatcatcatgctcattctcttcactactagtcct 32558933  T
Q  412 cattagtgatacatctttctccttttgtatgcctataaggacaagttggttcccctccccattctattctgctgtctacataggcacataagacaatgag 511  Q
    || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32558934 cactagtgataca-atttctccttttgtatgcctataaggacaagttggttcccctccccattcttttctgctgtctacataggcacataagacaatgag 32559032  T
Q  512 ggtgaac 518  Q
    |||||||    
T  32559033 ggtgaac 32559039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 32739506 - 32739369
Alignment:
Q  29 catcaaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaaggcttgttagcatgtcgtgcaatcaaaagtataaccaaca 128  Q
    ||||||||| |||||||||||| | | || ||||||||||| ||||| ||||||||  |||||||||||||| ||  | | |||||||||||||||||||    
T  32739506 catcaaattcgactttgaaccaattgctataataaaataaagtaagacatttctttataaggcttgttagcaagttatacgatcaaaagtataaccaaca 32739407  T
Q  129 caactaatcattctcaaatttttcttcttaaagtctat 166  Q
     | |||||||| || |  || ||||||||||| |||||    
T  32739406 aagctaatcatactaagtttattcttcttaaaatctat 32739369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 32762427 - 32762351
Alignment:
Q  14 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaagg 90  Q
    ||||||||||  | ||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||| ||||    
T  32762427 aacataaaagcaaatcatcaaattagagtttgaaccatttgttagaataaaataaaataagagatgtctttgtaagg 32762351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 28474287 - 28474179
Alignment:
Q  14 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaaggcttgttagcatgtcgtgcaatca 113  Q
    ||||||||||| | ||||||||||| ||||||||||||| | |||||||||     |||||||| ||| ||| |||||||||||||| ||  || |||||    
T  28474287 aacataaaagaaaatcatcaaattatactttgaaccatttgttagaataaa-----ataagaga-ttcattgtaaggcttgttagcaagttttgtaatca 28474194  T
Q  114 aaagtataaccaaca 128  Q
    |||||||||||||||    
T  28474193 aaagtataaccaaca 28474179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 32660846 - 32660907
Alignment:
Q  14 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaaataaga 75  Q
    |||| |||||| | |||||||||||||| |||||||||| | |||||||||||| |||||||    
T  32660846 aacaaaaaagaaactcatcaaattagacgttgaaccatttgctagaataaaatataataaga 32660907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 32656784 - 32656854
Alignment:
Q  59 aataaaataaaataagagatttctttgcaa-ggcttgttagcatgtcgtgcaatcaaaagtataaccaaca 128  Q
    |||||||||||||| || |||||| || || |||||||||||| | | |||||| ||||||||||||||||    
T  32656784 aataaaataaaataggacatttctatgtaaaggcttgttagcaagccatgcaattaaaagtataaccaaca 32656854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 32662621 - 32662677
Alignment:
Q  14 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaaa 70  Q
    ||||||||||| | | |||||||||||||  |||||||| | |||||||||||||||    
T  32662621 aacataaaagaaaataatcaaattagactaagaaccatttgctagaataaaataaaa 32662677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 17582930 - 17582792
Alignment:
Q  14 aacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaaggcttgttagcatgtcgtgcaatca 113  Q
    ||||| ||||| | ||||||||||||||||||||||||| | |||||||||||||||     ||||| |||| ||||||||||||||  |  ||||||||    
T  17582930 aacatcaaagaaaatcatcaaattagactttgaaccatttgttagaataaaataaaa-----gatttatttgtaaggcttgttagcaaattatgcaatca 17582836  T
Q  114 aaagtataaccaacacaa--ctaatcattctcaaatttttcttc 155  Q
    ||||||||||||||| ||  |||||||||||||| || ||||||    
T  17582835 aaagtataaccaacataaagctaatcattctcaatttattcttc 17582792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 17590832 - 17590689
Alignment:
Q  19 aaaagatagtcatcaaattagactttgaaccattaggtagaataaaata-----aaataagagatttctttgcaaggcttgttagcatgtcgtgcaatca 113  Q
    |||||| | ||||||||||||||||||| | ||| | ||||||||||||     ||||||||||||||||||  ||||||||||||| ||  ||||| ||    
T  17590832 aaaagaaaatcatcaaattagactttgatcgatttgttagaataaaatataataaaataagagatttctttgtgaggcttgttagcaagttatgcaacca 17590733  T
Q  114 aaagtataaccaac--acaactaatcattctcaaatttttcttc 155  Q
    ||||||||| ||||  ||| |||||||||||||| || ||||||    
T  17590732 aaagtataatcaacatacagctaatcattctcaatttattcttc 17590689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 17590629 - 17590540
Alignment:
Q  172 agtttagggaagccatacaagaagttcatactgtacac--ataaaagtttaaaaattgaaggttatacaaaactaaagacattcataatta 260  Q
    ||||||||||| | |||||||||||||||||  |||||  ||||||  | |||||| ||||| ||||||||| |||||||||||| |||||    
T  17590629 agtttagggaaacaatacaagaagttcataccatacacatataaaaactcaaaaatagaagg-tatacaaaattaaagacattcacaatta 17590540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 7970574 - 7970706
Alignment:
Q  28 tcatcaaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaaggcttgttagcatgtcgtgcaatcaaaagtataaccaac 127  Q
    |||||||||||||||||||||||||   || ||||||||||| |||||||||| | || ||||||||||||||   | ||||||||||||||||||||||    
T  7970574 tcatcaaattagactttgaaccattttctataataaaataaagtaagagattt-tatgtaaggcttgttagcagaccatgcaatcaaaagtataaccaac 7970672  T
Q  128 acaa-ctaatcattctcaaatttttcttcttaaa 160  Q
    | || || |||||||| || || |||||||||||    
T  7970673 ataagctgatcattcttaatttattcttcttaaa 7970706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 37576493 - 37576412
Alignment:
Q  63 aaataaaataagagatttctttgcaaggcttgttagcatgtcgtgcaatcaaaagtataaccaacacaa--ctaatcattct 142  Q
    ||||||||||||||| ||||||| |||||||||||||| ||  ||||||||||||||||||||||| ||  |||||||||||    
T  37576493 aaataaaataagagaattctttgtaaggcttgttagcaagttatgcaatcaaaagtataaccaacataaatctaatcattct 37576412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 37576230 - 37576157
Alignment:
Q  361 cacttattcatcatcaccatcatcatgctcattctcttcactactagtcctcattagtgatacatctttctcctttt 437  Q
    ||||||||||||||   |||||||||||||| ||||||||||||||| | ||||| || || |||||||||||||||    
T  37576230 cacttattcatcat---catcatcatgctcactctcttcactactagacatcatttgttatgcatctttctcctttt 37576157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 16751889 - 16751831
Alignment:
Q  32 caaattagactttgaaccattaggtagaataaaataaaataagagatttctttgcaagg 90  Q
    ||||||||||||||||||||| | |||| ||||||||| |||||| |||| ||| ||||    
T  16751889 caaattagactttgaaccatttgatagagtaaaataaagtaagaggtttcattgtaagg 16751831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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