View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14050_low_3 (Length: 494)
Name: NF14050_low_3
Description: NF14050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14050_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 97 - 483
Target Start/End: Original strand, 9688238 - 9688623
Alignment:
| Q |
97 |
gatagtcgagtgttaaccctcaacaattgatcaccaaatcatgaagatatcaaaggtcgatcacaacagaaattcctcaacaacctcaactgttttctcg |
196 |
Q |
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| T |
9688238 |
gatagtcgagtgttaaccctcaacaattgatcaccaaatcatgaaaatatcaaaggccgatcacaatagaaattcctcaacaacctcaactgttttctcg |
9688337 |
T |
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| Q |
197 |
ttaatttctcctcaaactctacctttgaaagaatctatgcaccagaagaaagatacacattccattctattaaaattttcacccacttcactcataatct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9688338 |
ttaatttctcctcaaactctacctttgaaagaatctatgcactagaagaaaggtacacattccattctattaaaattttcacccacttcactcaaaatct |
9688437 |
T |
|
| Q |
297 |
gacttgagtgttaaagtgtttgcatatactagtgacaactatgagcatgtttatggtgtgaaattggacatggttcca-nnnnnnnnggcaccaatattt |
395 |
Q |
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||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9688438 |
gactt--gtgttgaagagtttgcatatactagtgacagctatgagcatgtttatggtgtgaaattggacatggttccatatttttttggcaccaatattt |
9688535 |
T |
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| Q |
396 |
tctttgttacaaaagttatttagttaaaaaatgtatatgtcaaaaggttaaggggctcaatcgttttaaaaaatattaggccagaatt |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9688536 |
tctttgttacaaaagttatttagttaaaaaatgtatatgtcaaaaggttaaggggctcaatcgttttaaaaaatattaggccaaaatt |
9688623 |
T |
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