View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14051_high_1 (Length: 750)
Name: NF14051_high_1
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 4 - 728
Target Start/End: Original strand, 46612568 - 46613295
Alignment:
| Q |
4 |
attttgttttaacaaagcgttatcttgctatttcaaagatgttataaggtggacctatcagttggtttggagagggatgtaagagttggatatcttcatc |
103 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46612568 |
attttttttttacaaagcgttatcttgctatttcaaagatgttataaggtggacctatcagttagtttggagagggatgtaagagttggatatcttcatc |
46612667 |
T |
|
| Q |
104 |
aaaacagaacatttcattacttccaaatttgagggaggtccaagaatccaaattcgaattttagctgaaactatcattgaatatgttttacttacttctc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46612668 |
aaaacagaacatttcattacttccaaatttgagggagatccaagaatccaaattcgaattttagctgaaactatcattgaatatgttttacttacttctc |
46612767 |
T |
|
| Q |
204 |
aaccgaatttcacattattagacttcttttctgcaagaattggagagctaaggccatcaaagaatgattttggagggagggatacgaaagtgctgcgaaa |
303 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46612768 |
aaccgaatttcatattattagacttcttttctgcaagaattggagagctaagaccatcaaagaatgattttggagggagggatacgaaagtgctgcgaaa |
46612867 |
T |
|
| Q |
304 |
actaaaatactcttatttttctttccgtttccatcactgtattttaataacaaatgtta---tgttaattgttatgttagtattttcatctttgttaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46612868 |
actaaaatactcttatttttctttccgtttccatcactattttttaataacaaatgttaatatgttaattgttatgttagtattttcatctttgttaaga |
46612967 |
T |
|
| Q |
401 |
cttgaaccctgaaccttttaagccacgggaaatcttcttacgactaatggataaacggacagtaaataaataaaatttaaaagttatctcatctgtcata |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46612968 |
cttgagccctgaaccttttaagccacgggaaatcttcttacgactaatggataaacgggcagtaaataaataaaatttaaaagttatctcatctgtcata |
46613067 |
T |
|
| Q |
501 |
ttgcatattattgttcatagaattatattttcaccctatagcttaagctgaatttgttcctttattaaagaagtaacttgaagaaaaagtttctttgatt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46613068 |
ttgcatattattgttcatagaattatattttcaccctatagcttaagctgaatttgttcctttattaaagaactaacttgaagaaaaagtttctttgatt |
46613167 |
T |
|
| Q |
601 |
tcaggggaatccaatcaatgacaaggagaaatcaggataaattagcaatcataattcattataaactgtaacatatgtatagaaaatttgcagacaaagg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46613168 |
tcaggggaatccaatcaatgacaaggagaaatcaggataaattagcaatcataattcattataaaatgtaacatatgtatagaaaatttgcagacaaagg |
46613267 |
T |
|
| Q |
701 |
ccactctacaattaaacaagaattaagg |
728 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
46613268 |
ccactctacaattaaacatgaattaagg |
46613295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 6610963 - 6611010
Alignment:
| Q |
361 |
tatgttaattgttatgttagtattttcatctttgttaagacttgaacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
6610963 |
tatgttaattgttatgttagtatttttctctttgtcaagacttaaacc |
6611010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 26179542 - 26179584
Alignment:
| Q |
345 |
ttttaataacaaatgttatgttaattgttatgttagtattttc |
387 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
26179542 |
ttttaaaaataaatattatgttaattgttatgttagtattttc |
26179584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University