View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14051_high_12 (Length: 293)

Name: NF14051_high_12
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14051_high_12
NF14051_high_12
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-100)||(62060-62149)
[»] chr6 (10 HSPs)
chr6 (11-105)||(4107947-4108041)
chr6 (11-100)||(28573828-28573917)
chr6 (11-99)||(6969295-6969383)
chr6 (11-98)||(25529241-25529328)
chr6 (18-92)||(34316957-34317031)
chr6 (11-100)||(15045546-15045635)
chr6 (11-87)||(9981259-9981335)
chr6 (24-99)||(1218517-1218592)
chr6 (24-99)||(24443926-24444001)
chr6 (28-76)||(4897511-4897559)
[»] chr8 (17 HSPs)
chr8 (11-99)||(4466420-4466508)
chr8 (11-93)||(25616497-25616580)
chr8 (11-93)||(7389203-7389285)
chr8 (11-98)||(25620714-25620801)
chr8 (11-89)||(41972965-41973043)
chr8 (11-100)||(24053912-24054001)
chr8 (18-100)||(19243233-19243315)
chr8 (18-100)||(19316417-19316499)
chr8 (11-96)||(40616094-40616179)
chr8 (11-99)||(36776403-36776491)
chr8 (28-76)||(40587709-40587757)
chr8 (18-93)||(45298259-45298334)
chr8 (28-82)||(8760717-8760771)
chr8 (28-82)||(25836282-25836336)
chr8 (11-76)||(25346056-25346121)
chr8 (11-76)||(41534248-41534313)
chr8 (28-68)||(45435020-45435060)
[»] chr4 (19 HSPs)
chr4 (11-99)||(12682755-12682843)
chr4 (201-280)||(45836600-45836679)
chr4 (11-99)||(2116088-2116176)
chr4 (11-93)||(46104184-46104266)
chr4 (28-86)||(35833430-35833488)
chr4 (11-99)||(3821198-3821286)
chr4 (11-100)||(5752445-5752538)
chr4 (31-101)||(24948306-24948376)
chr4 (11-99)||(39716717-39716805)
chr4 (11-94)||(15704115-15704198)
chr4 (11-98)||(35498532-35498619)
chr4 (11-96)||(13171627-13171712)
chr4 (11-68)||(17730463-17730520)
chr4 (11-99)||(3757725-3757813)
chr4 (11-99)||(50119957-50120045)
chr4 (28-99)||(51347487-51347558)
chr4 (28-82)||(8956932-8956986)
chr4 (28-82)||(8986904-8986958)
chr4 (28-82)||(37349802-37349856)
[»] chr3 (13 HSPs)
chr3 (11-99)||(26777850-26777938)
chr3 (11-93)||(53800504-53800586)
chr3 (14-99)||(4139350-4139435)
chr3 (11-102)||(8393559-8393650)
chr3 (11-98)||(19895645-19895732)
chr3 (53-100)||(39838225-39838272)
chr3 (11-100)||(18682483-18682576)
chr3 (34-101)||(11602187-11602254)
chr3 (11-76)||(22519211-22519276)
chr3 (11-76)||(19368941-19369006)
chr3 (11-96)||(28981817-28981902)
chr3 (11-99)||(29530561-29530649)
chr3 (11-75)||(40831926-40831990)
[»] chr7 (15 HSPs)
chr7 (11-99)||(49146122-49146211)
chr7 (11-99)||(4848347-4848436)
chr7 (11-99)||(688062-688150)
chr7 (28-99)||(46197415-46197487)
chr7 (11-98)||(39651148-39651235)
chr7 (11-76)||(11840447-11840512)
chr7 (11-76)||(21600970-21601035)
chr7 (11-99)||(9143472-9143563)
chr7 (11-99)||(39276612-39276700)
chr7 (23-92)||(42912138-42912207)
chr7 (16-83)||(19049132-19049199)
chr7 (28-98)||(29467751-29467821)
chr7 (11-93)||(29684113-29684195)
chr7 (24-76)||(17169046-17169098)
chr7 (24-84)||(31899998-31900058)
[»] chr1 (17 HSPs)
chr1 (11-92)||(5426222-5426303)
chr1 (11-100)||(47134702-47134791)
chr1 (11-99)||(16300388-16300476)
chr1 (28-99)||(38894754-38894825)
chr1 (11-101)||(52306066-52306156)
chr1 (29-102)||(19322362-19322435)
chr1 (24-99)||(1367290-1367365)
chr1 (24-100)||(17364616-17364692)
chr1 (24-100)||(33359698-33359774)
chr1 (28-96)||(43116050-43116118)
chr1 (24-99)||(4890097-4890172)
chr1 (24-99)||(29188313-29188388)
chr1 (28-98)||(33075673-33075743)
chr1 (18-96)||(47392055-47392133)
chr1 (11-76)||(46626324-46626389)
chr1 (28-99)||(1826792-1826863)
chr1 (30-98)||(41918924-41918992)
[»] scaffold0759 (1 HSPs)
scaffold0759 (11-99)||(5891-5979)
[»] chr2 (13 HSPs)
chr2 (11-100)||(28607219-28607308)
chr2 (11-99)||(10050189-10050277)
chr2 (28-99)||(32677200-32677271)
chr2 (24-98)||(4292795-4292869)
chr2 (24-97)||(9545788-9545861)
chr2 (11-100)||(24520864-24520953)
chr2 (24-76)||(2952779-2952831)
chr2 (15-86)||(21836203-21836274)
chr2 (28-65)||(19132536-19132573)
chr2 (11-92)||(19486111-19486192)
chr2 (11-76)||(19486211-19486276)
chr2 (28-76)||(17836989-17837037)
chr2 (14-94)||(18096495-18096575)
[»] chr5 (14 HSPs)
chr5 (11-98)||(34727334-34727422)
chr5 (12-93)||(12422345-12422426)
chr5 (11-98)||(3088031-3088118)
chr5 (11-98)||(33709813-33709900)
chr5 (28-100)||(17643402-17643474)
chr5 (11-99)||(30140501-30140589)
chr5 (11-98)||(25698717-25698804)
chr5 (12-100)||(22693716-22693804)
chr5 (28-99)||(36886985-36887056)
chr5 (24-99)||(41689274-41689349)
chr5 (28-82)||(6305466-6305520)
chr5 (28-82)||(43138563-43138617)
chr5 (11-76)||(30754431-30754496)
chr5 (28-95)||(42977849-42977913)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-100)||(225433-225519)
[»] scaffold0057 (1 HSPs)
scaffold0057 (24-100)||(20592-20668)
[»] scaffold0429 (1 HSPs)
scaffold0429 (18-100)||(12959-13040)
[»] scaffold0069 (1 HSPs)
scaffold0069 (25-100)||(11771-11846)


Alignment Details
Target: scaffold0051 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 62149 - 62060
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  62149 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 62060  T

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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 4108041 - 4107947
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagataatgtc 105  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4108041 ctcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtatatagattatgtc 4107947  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 28573828 - 28573917
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  28573828 ctcaaccaatttgtaatttaccaaattgcccctcctaggggcaaaatggtaaaatcaaaggatattaacttttatatcagtatatagata 28573917  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 6969295 - 6969383
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||| | |||||||||||||||||||||||| ||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  6969295 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaacttttatattagtatatagat 6969383  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 25529328 - 25529241
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    ||||||||||| |||  |||||||||||||||| ||| ||||||||| |||||| ||| ||||||  | |||||||||||||||||||    
T  25529328 ctcaaccaattagtagattaccaaattgccccttataggagcaaaatcgtaaaagcaacggacatggatttttatattagtatataga 25529241  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 34317031 - 34316957
Alignment:
Q  18 aatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagta 92  Q
    |||| |||| ||||||||||||||||| || | |||||| |||||||||||||||||| |  |||||||||||||    
T  34317031 aattagtaaattaccaaattgcccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagta 34316957  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 15045546 - 15045635
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||| |||||||||||||||||||| ||| | ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  15045546 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagata 15045635  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 9981259 - 9981335
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatat 87  Q
    ||||||||||| | ||||||||||||||||||| ||| | | ||||||||||| |||||| |||||  |||||||||    
T  9981259 ctcaaccaattagcaatttaccaaattgccccttataggggtaaaatggtaaattcaatgaacatttccttttatat 9981335  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 1218592 - 1218517
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||| | ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  1218592 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 1218517  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 24444001 - 24443926
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  24444001 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtatatagat 24443926  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 4897511 - 4897559
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||||||| ||| | ||||||||||||| |||| |||||||    
T  4897511 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 4897559  T

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Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 4466420 - 4466508
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  4466420 ctcaaccaatttgtaatttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4466508  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 25616497 - 25616580
Alignment:
Q  11 ctcaaccaattt-gtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    |||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  25616497 ctcaaccaattttgtaatttaccaaattgcccctcttaagggcaaaatggtaaaatcaatggacattaacttttatattagtat 25616580  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 7389285 - 7389203
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    |||||||||||||||||||||||||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  7389285 ctcaaccaatttgtaatttaccaaattgcccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtat 7389203  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 25620714 - 25620801
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| ||| ||||||    
T  25620714 ctcaactaatttgtaatttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacatgaacttttatatcagtgtataga 25620801  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 41973043 - 41972965
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatatta 89  Q
    ||||||||||| |||  |||||||||||||||| ||| | ||||||||||||| |||| ||||||| | ||||||||||    
T  41973043 ctcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttaattttatatta 41972965  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 24054001 - 24053912
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    ||||||||||  |||  |||||||||||||||| ||| ||||||||||||||| |||| |||||||   |||  ||||||||||||||||    
T  24054001 ctcaaccaataagtagattaccaaattgccccttataggagcaaaatggtaaattcaagggacatttcttttcttattagtatatagata 24053912  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 19243315 - 19243233
Alignment:
Q  18 aatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||| |||| |||||||||||||||| | | | |||||| |||||||||||  ||||| |  |||||||||||||||||||||    
T  19243315 aattagtaaattaccaaattgcccctaagaggggcaaaaaggtaaaatcaacagacatcactttttatattagtatatagata 19243233  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 19316499 - 19316417
Alignment:
Q  18 aatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||| |||| |||||||||||||||| | | | |||||| |||||||||||  ||||| |  |||||||||||||||||||||    
T  19316499 aattagtaaattaccaaattgcccctaagaggggcaaaaaggtaaaatcaacagacatcactttttatattagtatatagata 19316417  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 40616094 - 40616179
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatata 96  Q
    ||||||||||| |||  ||||||||||||| || ||| ||||||||||||||| |||| ||||||  | |||  ||||||||||||    
T  40616094 ctcaaccaattagtagattaccaaattgcctcttataggagcaaaatggtaaattcaagggacatggattttcttattagtatata 40616179  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 36776491 - 36776403
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||| |||||||   |||  |||||||||||||||    
T  36776491 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 36776403  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 40587709 - 40587757
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  40587709 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 40587757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 45298259 - 45298334
Alignment:
Q  18 aatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    |||| |||| ||||||||||||||||| || | | |||| ||||||||||||| |||| |  ||||||||||||||    
T  45298259 aattagtaaattaccaaattgcccctcttaggggtaaaaaggtaaaatcaatgtacatcattttttatattagtat 45298334  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8760771 - 8760717
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  8760771 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 8760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 25836282 - 25836336
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  25836282 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 25836336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 25346121 - 25346056
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    ||||||||||  |||  |||||||||||||||| |||   ||||||||||||| ||||||||||||    
T  25346121 ctcaaccaataagtagattaccaaattgccccttatagaggcaaaatggtaaattcaatggacatt 25346056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 41534248 - 41534313
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||| |||  |||||||    
T  41534248 ctcaaccaattaataatttatcaaattgtcccttataggagcaaaatggtaaattcatgggacatt 41534313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 45435060 - 45435020
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaa 68  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  45435060 ttaccaaattgccccttataagggcaaaatggtaaattcaa 45435020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 12682755 - 12682843
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12682755 ctcaaccaatttataatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 12682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 45836679 - 45836600
Alignment:
Q  201 aaactcaattgtctggcatgagggtagcaaaacaaaaaccagtacagtaaagaaccaagcactgaccaaaaatattgtcc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45836679 aaactcaattgtctggcatgagggtagcaaaacaaaaaccagtacagaaaagaaccaagcactgaccaaaaatattgtcc 45836600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 2116176 - 2116088
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2116176 ctcaaccaatttataatttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 2116088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 46104266 - 46104184
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||    
T  46104266 ctcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaatggacattaacttttatattagtat 46104184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 35833430 - 35833488
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttata 86  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  35833430 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttata 35833488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 3821198 - 3821286
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||||||||| |||| ||||||||  ||| |||| |||||||||||    
T  3821198 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtatatagat 3821286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 5752538 - 5752445
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggac----attaacttttatattagtatatagata 100  Q
    |||||| | |||||||||||||||||||||||| ||| | ||||||||||||| |||| ||||    ||||| ||||||| |||||||||||||    
T  5752538 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaattaatttttatactagtatatagata 5752445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 24948306 - 24948376
Alignment:
Q  31 ccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagataa 101  Q
    ||||||||||||| ||| ||||||||||||||| |||| |||||||   |||||||| |||||||||||||    
T  24948306 ccaaattgccccttataggagcaaaatggtaaattcaaaggacatttctttttatataagtatatagataa 24948376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 39716717 - 39716805
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||   |||||||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  39716717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 39716805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 15704198 - 15704115
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtata 94  Q
    ||||||||||| ||||||||||||||| ||||| ||| | ||||||||||||| | || | ||||||  |||||||| ||||||    
T  15704198 ctcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatttaaagaacattactttttatataagtata 15704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 35498532 - 35498619
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    ||||||||||| |||||||||||||||| || | ||| | |||||||| |||| |||| || ||||   |||||||||||||||||||    
T  35498532 ctcaaccaattagtaatttaccaaattgtcctttataggggcaaaatgataaattcaagggccatttctttttatattagtatataga 35498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 13171712 - 13171627
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatata 96  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||| ||||||| | |||  ||||||||||||    
T  13171712 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatata 13171627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 17730520 - 17730463
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaa 68  Q
    ||||||||||| |||  |||||||||||||||| ||| ||||||||||||||| ||||    
T  17730520 ctcaaccaattagtagattaccaaattgccccttataggagcaaaatggtaaattcaa 17730463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 3757813 - 3757725
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||||| |||||   |||  |||||||||||||||    
T  3757813 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaatgaacatttcttttcttattagtatatagat 3757725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 50119957 - 50120045
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||| |||||||   |||  |||||||||||||||    
T  50119957 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacattccttttcttattagtatatagat 50120045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 51347558 - 51347487
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||| ||| | ||||||||||||| |||| |||||||   |||  |||||||||||||||    
T  51347558 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 51347487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8956986 - 8956932
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  8956986 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 8956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 8986958 - 8986904
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  8986958 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 8986904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 37349856 - 37349802
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  37349856 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 37349802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 26777850 - 26777938
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26777850 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacgttaacttttatattagtatatagat 26777938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 53800586 - 53800504
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  53800586 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggtaaaatcaatggacattaacttttatattagtat 53800504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 4139350 - 4139435
Alignment:
Q  14 aaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4139350 aaccaatttgtaatttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4139435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 8393650 - 8393559
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagataat 102  Q
    |||||| | |||||||||||||||||||||||| ||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  8393650 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatatagataat 8393559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 19895645 - 19895732
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||  |||||||||||||||||| | ||||| ||||||||||||| ||||||||||||  ||| ||||| ||||||||||    
T  19895645 ctcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacattttcttctatataagtatataga 19895732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 39838225 - 39838272
Alignment:
Q  53 aaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  39838225 aaaatggtaaaatcaacggacattaacttttatattagtatatagata 39838272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 18682576 - 18682483
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggac----attaacttttatattagtatatagata 100  Q
    |||||| | |||||||||||||||||||||||| ||| | ||||||||||||| |||| ||||    ||||| ||||||| |||||||||||||    
T  18682576 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaattaatttttatactagtatatagata 18682483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 11602187 - 11602254
Alignment:
Q  34 aattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagataa 101  Q
    |||||||||| ||| | |||||||||||||||||| ||||||  | ||||||||||||||||||||||    
T  11602187 aattgccccttataggggcaaaatggtaaaatcaacggacatggatttttatattagtatatagataa 11602254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 22519276 - 22519211
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||  |||||||| ||||||||||| ||| | ||||||||||||| ||||||||||||    
T  22519276 ctcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggacatt 22519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 19368941 - 19369006
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    ||||||||||  |||  |||||||||||||||| ||| | |||||||||||||||||| |||||||    
T  19368941 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaaatcaagggacatt 19369006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 28981817 - 28981902
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatata 96  Q
    ||||||||||| ||   |||||||||||||||| ||| | ||||||||||||| |||| ||||||  | |||  ||||||||||||    
T  28981817 ctcaaccaattagttgattaccaaattgccccttataggggcaaaatggtaaattcaagggacatggattttcttattagtatata 28981902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 29530561 - 29530649
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||  |||  |||||||||||||||| ||| |  |||||||||||| |||| |||||||   |||  |||||||||||||||    
T  29530561 ctcaaccaataagtagattaccaaattgccccttatagggacaaaatggtaaattcaagggacatttcttttcttattagtatatagat 29530649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 40831926 - 40831990
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacat 75  Q
    ||||||||||| |||  ||||| ||||| |||| ||| ||||||||||||||| |||| ||||||    
T  40831926 ctcaaccaattagtagattaccgaattgtcccttataggagcaaaatggtaaattcaagggacat 40831990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 49146122 - 49146211
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaac-ttttatattagtatatagat 99  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49146122 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaactttttatattagtatatagat 49146211  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 4848436 - 4848347
Alignment:
Q  11 ctcaaccaattt-gtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848436 ctcaaccaattttgtaatttaccaaattacccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4848347  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 688150 - 688062
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||| | |||||||||||||||||||||||| ||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  688150 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatatagat 688062  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 46197487 - 46197415
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttata-ttagtatatagat 99  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46197487 ttaccaaattgcctctcctaagggcaaaatggtaaaatcaatggacattaacttttatatttagtatatagat 46197415  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 39651148 - 39651235
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  39651148 ctcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 39651235  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 11840447 - 11840512
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||  |||||||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  11840447 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 11840512  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 21600970 - 21601035
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||  |||||||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  21600970 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 21601035  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 9143563 - 9143472
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatta---acttttatattagtatatagat 99  Q
    |||||| |||| ||||||||||||||||||||| ||| | ||||||||||||| |||| ||| ||||     ||||||||||||||||||||    
T  9143563 ctcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggatattatttctttttatattagtatatagat 9143472  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 39276700 - 39276612
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||| |||||||||||||||||||| ||| | ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  39276700 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagat 39276612  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 42912207 - 42912138
Alignment:
Q  23 gtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagta 92  Q
    |||| ||| ||||||||||||| |||| |||||| |||||||||||||||||| |  ||||||| |||||    
T  42912207 gtaaattagcaaattgcccctcttaagggcaaaaaggtaaaatcaatggacatcactttttatactagta 42912138  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 19049199 - 19049132
Alignment:
Q  16 ccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaactttt 83  Q
    |||||||||||||||| ||| | ||||| ||||| ||||||||||||||  ||| |||||||| ||||    
T  19049199 ccaatttgtaatttactaaaatacccctaataagggcaaaatggtaaaagaaatagacattaattttt 19049132  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 29467821 - 29467751
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  29467821 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatataga 29467751  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 29684113 - 29684195
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    ||||||||||| |||  |||||||||||||||| ||| | | ||||||||||| |||| | |||||   ||||||||||||||    
T  29684113 ctcaaccaattagtagattaccaaattgccccttataggggtaaaatggtaaattcaaggcacatttctttttatattagtat 29684195  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 17169098 - 17169046
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||||||||| | ||| | ||||||||||||| |||| |||||||    
T  17169098 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatt 17169046  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 31899998 - 31900058
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaactttta 84  Q
    |||| ||||||||||||||| ||| | ||||||| ||||| |||| |||||||| ||||||    
T  31899998 taatctaccaaattgcccctaataggggcaaaattgtaaattcaaaggacattacctttta 31900058  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 5426303 - 5426222
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagta 92  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||    
T  5426303 ctcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacattaactgttatattagta 5426222  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 47134791 - 47134702
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    ||||||||||| ||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  47134791 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtatatagata 47134702  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 16300476 - 16300388
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| ||| |||| |||||||||||    
T  16300476 ctcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacattaattttaatataagtatatagat 16300388  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 38894825 - 38894754
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||| ||| | ||||||||||||| |||||||||||| |||||  |||||||||||||||    
T  38894825 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttactttcttattagtatatagat 38894754  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 52306156 - 52306066
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagataa 101  Q
    ||||||||||| |||||||| |||||||||||| ||| | ||||||||||||| | || ||| |||   |||||||| |||||||||||||    
T  52306156 ctcaaccaattagtaatttatcaaattgccccttataggggcaaaatggtaaattaaagggatatttctttttatataagtatatagataa 52306066  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 19322362 - 19322435
Alignment:
Q  29 taccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagataat 102  Q
    ||||||||||||||| ||| | ||||||||||||| |||| ||||||| | |||  ||||||||||||||||||    
T  19322362 taccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatatagataat 19322435  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 1367365 - 1367290
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  1367365 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 1367290  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 17364616 - 17364692
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| ||| |||   ||| |||| ||||||||||||    
T  17364616 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtatatagata 17364692  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 33359774 - 33359698
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||||||||||| | ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  33359774 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagata 33359698  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 43116118 - 43116050
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatata 96  Q
    ||||||||||||||||| || | ||||||| | ||| |||||||||||  | |||||||||||||||||    
T  43116118 ttaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtatata 43116050  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 4890172 - 4890097
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||||| |||   ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  4890172 taatttaccaaattgcccctaatagaggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 4890097  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 29188313 - 29188388
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||| | ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  29188313 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 29188388  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 33075673 - 33075743
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  33075673 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatataga 33075743  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 47392055 - 47392133
Alignment:
Q  18 aatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatata 96  Q
    |||| |||| |||||||||||||| ||  |  ||||||| ||||||||||| |||||| |  |||||||||||||||||    
T  47392055 aattagtaaattaccaaattgcccatctcataagcaaaaaggtaaaatcaacggacatcactttttatattagtatata 47392133  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 46626324 - 46626389
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||| |||||||    
T  46626324 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 46626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 1826863 - 1826792
Alignment:
Q  28 ttaccaaattgcccctcataagagc-aaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||| ||| |||| ||||||||||| |||| ||||||||  ||| |||| |||||||||||    
T  1826863 ttaccaaattgccccttata-gagccaaaatggtaaattcaagggacattacttttaatataagtatatagat 1826792  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 41918924 - 41918992
Alignment:
Q  30 accaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    ||||||||||| ||| || | ||||||| | ||| |||||||||||  | |||||||||||||||||||    
T  41918924 accaaattgccactcctaggggcaaaattggaaattcaatggacatatatttttatattagtatataga 41918992  T

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Target: scaffold0759 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 5891 - 5979
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||| | |||||||||||||||||||||||| ||| | ||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  5891 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttttatattagtatatagat 5979  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 28607308 - 28607219
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    ||||||||||||||||||||||||||||||||| ||| |  |||||||||||| |||||||||||| | ||| |||| ||||||||||||    
T  28607308 ctcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtatatagata 28607219  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 10050189 - 10050277
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||| |||||||| |||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  10050189 ctcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 10050277  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 32677200 - 32677271
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||| ||| | ||||||||||||| |||| ||||||| | ||| |||| |||||||||||    
T  32677200 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttaatataagtatatagat 32677271  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 4292795 - 4292869
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||||||||| | ||| ||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  4292795 taatttaccaaattgcccttaataggagcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 4292869  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 9545788 - 9545861
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatag 97  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||    
T  9545788 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatag 9545861  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 24520953 - 24520864
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    ||||||||||| ||||||||||||||||| ||| |||   |||||||  |||| |||| |||||||   |||||||| ||||||||||||    
T  24520953 ctcaaccaattagtaatttaccaaattgctccttatagaggcaaaattataaattcaagggacatttctttttatataagtatatagata 24520864  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2952831 - 2952779
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| |||||||    
T  2952831 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 2952779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 21836274 - 21836203
Alignment:
Q  15 accaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttata 86  Q
    ||||||| || | |||||||| ||||||||| ||| ||||||||||||||  ||  ||||||||||||||||    
T  21836274 accaattagtgaattaccaaaatgcccctcaaaagggcaaaatggtaaaaaaaactgacattaacttttata 21836203  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 19132536 - 19132573
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaat 65  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  19132536 ttactaaaatgcccctcataagagcaaaatggtaaaat 19132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 19486111 - 19486192
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagta 92  Q
    ||||||||||  |||  |||||||||||||||| ||| | |||||||| |||| |||||||| |||  ||||||||| ||||    
T  19486111 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatgataaattcaatggatattttcttttatataagta 19486192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19486276 - 19486211
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||| |||||||    
T  19486276 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 19486211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 17837037 - 17836989
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    |||||||||||||||| ||| | ||||||||||||| |||| |||||||    
T  17837037 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 17836989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 18096575 - 18096495
Alignment:
Q  14 aaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtata 94  Q
    ||||||||  |||||| ||||||| ||||| ||| | ||||||||||||| |||| |||||||   |||||||| ||||||    
T  18096575 aaccaattaataatttgccaaattaccccttataggggcaaaatggtaaattcaaaggacatttctttttatataagtata 18096495  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 34727334 - 34727422
Alignment:
Q  11 ctcaaccaattt-gtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||| |||||||| ||||||||| ||  |||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  34727334 ctcaaccaattttgtaatttatcaaattgcctcttctaaagacaaaatggtaaaatcaatggacattaacttttatattagtatataga 34727422  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 12422345 - 12422426
Alignment:
Q  12 tcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtat 93  Q
    |||||||||| |||  |||||||||||||||| ||| | |||||||||||||||||| |||||| || ||||||||||||||    
T  12422345 tcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacatgaatttttatattagtat 12422426  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 3088031 - 3088118
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||  |||||||||||||||||||| ||| | ||||||||||||| |||| ||||||||  ||| |||| ||||||||||    
T  3088031 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtatataga 3088118  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 33709813 - 33709900
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    |||||||||||  |||||||||||||||||| | ||| | | ||||||||||| |||| ||||||||| ||| |||| ||||||||||    
T  33709813 ctcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacattaattttaatataagtatataga 33709900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 17643402 - 17643474
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||||||||| ||||| |||||||| |||| |||| ||||||| | |||  ||||||||||||||||    
T  17643402 ttaccaaattgccccttataagggcaaaatgataaattcaagggacatttattttcttattagtatatagata 17643474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 30140589 - 30140501
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    ||||||||||| ||||||||||||||| ||| | ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  30140589 ctcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 30140501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 25698717 - 25698804
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatataga 98  Q
    ||||||||||   |||||||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  25698717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 25698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 22693804 - 22693716
Alignment:
Q  12 tcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||| |||| ||| |||| | |||||| | || ||||||| | ||||||||| |||||  | |||||||||||||||||||||    
T  22693804 tcaaccaattagtaaattatcaaaatacccctcctgagggcaaaattggaaaatcaatagacatctatttttatattagtatatagata 22693716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 36886985 - 36887056
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||| ||| | ||||||||||||| |||| |||||||   |||  |||||||||||||||    
T  36886985 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 36887056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 41689349 - 41689274
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 99  Q
    |||||||||||||||||| | ||| | ||||||||||||| |||| |||||||   ||| |||| |||||||||||    
T  41689349 taatttaccaaattgcccataataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 41689274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 6305466 - 6305520
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  6305466 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 6305520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 43138563 - 43138617
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttt 82  Q
    |||||||||||||||| ||| | ||||||||||||| |||  |||||||||||||    
T  43138563 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 43138617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 30754496 - 30754431
Alignment:
Q  11 ctcaaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacatt 76  Q
    ||||||||||  |||  |||||||||||||||| ||| | ||||||||||||| |||| |||||||    
T  30754496 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaaaggacatt 30754431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 42977849 - 42977913
Alignment:
Q  28 ttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatat 95  Q
    |||||||||||||||| ||| | ||||||||||||   |||||||||||  ||||||||| |||||||    
T  42977849 ttaccaaattgccccttataggggcaaaatggtaa---caatggacattttcttttatataagtatat 42977913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 225519 - 225433
Alignment:
Q  14 aaccaatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||| ||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||   ||| |||| ||||||||||||    
T  225519 aaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatataagtatatagata 225433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 20592 - 20668
Alignment:
Q  24 taatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||||||||||||||||||| ||| | ||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  20592 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagata 20668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 13040 - 12959
Alignment:
Q  18 aatttgtaatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    |||| |||| ||||||||||||||||| || | |||||| |||||||||||| ||||| |  || ||||||||||||||||||    
T  13040 aattagtaaattaccaaattgcccctcttaggggcaaaa-ggtaaaatcaattgacatcactttctatattagtatatagata 12959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 11846 - 11771
Alignment:
Q  25 aatttaccaaattgcccctcataagagcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 100  Q
    ||||||||||||||||||| ||||  ||||||||||||| ||||  ||||||   ||| |||| ||||||||||||    
T  11846 aatttaccaaattgcccctaataaaggcaaaatggtaaattcaaatgacatttcttttaatataagtatatagata 11771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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