View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14051_high_14 (Length: 250)

Name: NF14051_high_14
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14051_high_14
NF14051_high_14
[»] chr1 (2 HSPs)
chr1 (13-250)||(16286621-16286858)
chr1 (13-250)||(17262904-17263158)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 16286621 - 16286858
Alignment:
Q  13 aatatatgaagtgcaaagatattctagtctcaacataatagtttccattgaaaattggcttaagtaatcatattcttaagaagcgtgcacatctcaaatg 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16286621 aatagatgaagtgcaaagatattctagtctcaacataatagtttccattgaaaattggcttaagtaatcatattctttagaagcgtgcacatctcaaatg 16286720  T
Q  113 agacacataacatgagacacaaggaatttcaacattaagaaatacaagaatttctgaacttttcttttatgcagactggtttttctgttagtcgaagtct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16286721 agacacataacatgagacacaaggaatttcaacattaagaaatacaagaatttctgaacttttcttttatgcagactggtttttctgttagtcgaagtct 16286820  T
Q  213 cttgggatatttcgagggggtaattacgttgttttaca 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16286821 cttgggatatttcgagggggtaattacgttgttttaca 16286858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 17263158 - 17262904
Alignment:
Q  13 aatatatgaagtgcaaagatattctagtctcaacataatagtttccattgaaaattggcttaagtaatcatattcttaagaagcgtgcacatctcaaatg 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17263158 aatacatgaagtgcaaagatattctagtctcaacataatagtttccattgaaaattggcttaagtaatcatattcttaagaagcgtgcccatctcaaatg 17263059  T
Q  113 agacacataacatgagacacaagga-----------------atttcaacattaagaaatacaagaatttctgaacttttcttttatgcagactggtttt 195  Q
    |||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17263058 agacacataacatgagacacaaggagtaattagtcacaaggaatttcaacattaagaaatacaagaatttctgaacttttcttttatgcagactggtttt 17262959  T
Q  196 tctgttagtcgaagtctcttgggatatttcgagggggtaattacgttgttttaca 250  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17262958 tctgttagtcgaagtctcttgggatatttcgagggggtaattaccttgttttaca 17262904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University