View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14051_high_2 (Length: 631)

Name: NF14051_high_2
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14051_high_2
NF14051_high_2
[»] scaffold0141 (1 HSPs)
scaffold0141 (40-289)||(6080-6329)
[»] chr1 (3 HSPs)
chr1 (355-631)||(44285603-44285878)
chr1 (355-631)||(44070135-44070410)
chr1 (140-309)||(49237921-49238090)
[»] chr3 (1 HSPs)
chr3 (545-631)||(16443758-16443843)


Alignment Details
Target: scaffold0141 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 40 - 289
Target Start/End: Original strand, 6080 - 6329
Alignment:
Q  40 gaaagaaaggagtagtgaaatgaaagaagaagggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6080 gaaagaaaggagtagtgaaatgaaagaagaagggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgt 6179  T
Q  140 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcgg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6180 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcgg 6279  T
Q  240 agagccactctttggtccaataaagagacagatcagcatccatagaatct 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280 agagccactctttggtccaataaagagacagatcagcatccatagaatct 6329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 355 - 631
Target Start/End: Original strand, 44285603 - 44285878
Alignment:
Q  355 ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct 454  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || || ||||||||||||    
T  44285603 ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct 44285702  T
Q  455 agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg 554  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  44285703 agttcttctcccaatctcggactcgaccttttagccgattcgcacctttactctctgtctcaatcaattcggtcagatcaatagagaagtcaggcactcg 44285802  T
Q  555 atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagt 631  Q
    || ||||||||||||| ||||| |||||||||  |||||||||||||||||||||||||||||||||  ||||||||    
T  44285803 attgacttaaaggaagattccg-ccgtaaattgattgatcaatgttaccgggaagcagcaacagagatggattgagt 44285878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 355 - 631
Target Start/End: Complemental strand, 44070410 - 44070135
Alignment:
Q  355 ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct 454  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |   ||||||||||| || ||||||||||||    
T  44070410 ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct 44070311  T
Q  455 agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg 554  Q
    ||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  44070310 agttcttctcccaatctcggactcagccgtttagccggtttgcacctttactctctgtctcaatctagccggtcagatcaatagagaagtcaggcacttg 44070211  T
Q  555 atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagt 631  Q
    || ||||||||||||||||||| |||| ||||  |||||  ||||| || |||||||||||||||||||||||||||    
T  44070210 attgacttaaaggaaggttccg-ccgttaattgattgattgatgttgccaggaagcagcaacagagacagattgagt 44070135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 140 - 309
Target Start/End: Complemental strand, 49238090 - 49237921
Alignment:
Q  140 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcgg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  49238090 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcgg 49237991  T
Q  240 agagccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  49237990 agagccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg 49237921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 545 - 631
Target Start/End: Complemental strand, 16443843 - 16443758
Alignment:
Q  545 caggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagt 631  Q
    |||||||| ||| ||||||||||||||||||||| || ||||  |||||  ||||| || |||||||||||||||||||||||||||    
T  16443843 caggcacttgattgacttaaaggaaggttccgcc-gttaattgattgattgatgttgccaggaagcagcaacagagacagattgagt 16443758  T

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