View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_high_6 (Length: 409)
Name: NF14051_high_6
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 52087325 - 52087703
Alignment:
| Q |
18 |
cttcaacacctcatctttaacttcttctcccaaaccctccttcaacttgaagaacaaaacttgcatagcagatccatgttgtagaaccaagtcgttatcg |
117 |
Q |
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| T |
52087325 |
cttcaacacctcatctttaacttcttctcccaaaccctccttcaacttgaagaacacaacttgcatagcagatccatgttgtagaaccaagtcgttatcg |
52087424 |
T |
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| Q |
118 |
tgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgtgtagggtgcactgcataggcatgga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087425 |
tgaacctcggtgacccaattaagagccatggtttcatcaactataggcttgttatctttgatgactgccaagtgtgtagggtgcactgcataggcatgga |
52087524 |
T |
|
| Q |
218 |
gatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaatacttaccaacggacccatagtcaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52087525 |
gatcttccttggatctgaatctactatggatcatgtgagtgaaattgaaagatgaaatggaattggaggattgaatacttaccaacggacccatagttaa |
52087624 |
T |
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| Q |
318 |
gtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgattgtggaacgtcttct |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52087625 |
gtgaagtggctcttcaagagagataagggaattcacttgcttcaccatggaatcaatcgctgattgtggaacgtcttct |
52087703 |
T |
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