View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_11 (Length: 373)
Name: NF14051_low_11
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 110 - 358
Target Start/End: Complemental strand, 29478156 - 29477913
Alignment:
| Q |
110 |
tgggaggcttaacatttccatttccatttcagttatattatatttttcaacatatctaactatgagttgatggtagatggatgttggcttggaaatggtt |
209 |
Q |
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| T |
29478156 |
tgggaggcttaacatttccatttccatttcagttatattatatttttcaacatatctaactatgagttgatggtagatggatgttggcttggaaatggtt |
29478057 |
T |
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| Q |
210 |
caagtgaaccaacgaatagaatgtcaatcaaccaccgacattaatggattgcttctggtgacaagaggtttgaatcctttcaacaaatcgttcgagaaac |
309 |
Q |
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| T |
29478056 |
caagtgaaccaacgaatagaatgtcaatcaaccaccgacattaatggattgcttctggtgacaagaggtttgaatcctttgaacaaatggttagagaaaa |
29477957 |
T |
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| Q |
310 |
actgacaaaatttctatttttagtatgctaacaagtgcactattaacat |
358 |
Q |
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| T |
29477956 |
aatgacaaaatttctat-----gtatgctaacaagtgcactaataacat |
29477913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 29478260 - 29478219
Alignment:
| Q |
6 |
tgagatgaaatataaagctataaattctattcttctatgtag |
47 |
Q |
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| T |
29478260 |
tgagatgaaatataaagctataaattctattcttttatgtag |
29478219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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