View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_12 (Length: 349)
Name: NF14051_low_12
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 25895039 - 25895363
Alignment:
| Q |
19 |
ccatagacttatttgccctcatacacaccaccaaaatggtgttgttgagagaaagcacgggcatatagttgaccttggctttaccctt--gagtcatgtc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
25895039 |
ccatagacttatttgccctcatacacaccaccaaaatggtgttgttgagagaaagcacgggcatatggttgaccttggctttacccttttgagtcatgtc |
25895138 |
T |
|
| Q |
117 |
tctcttccccttcaatattcggatcatgcttttcttactgccgtttacc--tccttaatagattaccctccacctct--caacaatgctaccccttattt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25895139 |
tctcttccccttcaatattcggatcatgcttttcttactgccgtttacccctccttaatagattaccctccacctctctcaacaatgctaccccttattt |
25895238 |
T |
|
| Q |
213 |
ttccctttttaaaacagcatcctgactataaattcctgtaagtttttggctgtgcgtgttttcctctccttaggccctacaatgctgacaagctagattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895239 |
ttccctttttaaaacagcatcctgactataaattcctgtaagtttttggctgtgcatgttttcctctccttaggccctacaatgctgacaagctagattt |
25895338 |
T |
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| Q |
313 |
tcgctctcatgaatgcgtgttccta |
337 |
Q |
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||||||||||||||||||||||||| |
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| T |
25895339 |
tcgctctcatgaatgcgtgttccta |
25895363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 32459013 - 32458936
Alignment:
| Q |
20 |
catagacttatttgccctcatacacaccaccaaaatggtgttgttgagagaaagcacgggcatatagttgaccttggc |
97 |
Q |
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||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||| || |||||| |
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| T |
32459013 |
catagtcttatttgtcctcatacacatcaccaaaatggtgttgtggagagaaaacataggcatatagtagatcttggc |
32458936 |
T |
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