View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_13 (Length: 316)
Name: NF14051_low_13
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 32821450 - 32821764
Alignment:
| Q |
6 |
agttttatcagaagaatagaaatagattcttagaatactggtttt-aggagaacatcttgacataat---tcaaccctgcaaaatcagcttgtaaggtaa |
101 |
Q |
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| T |
32821450 |
agttttatcaggagaatagaaatagattcttagaatactggatttcaggagaacatcttaacataataatttaaccctgcaaaatcagcttgtaaggtaa |
32821549 |
T |
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| Q |
102 |
gagcttcttaagttttataaacagtaaacgtgcatgtcatatctctagacaatgtgtaactaaatccaccctatatccaacacaatgaagatgttggaag |
201 |
Q |
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| T |
32821550 |
gaatttctcaagttttataaacagtaagcgtgcatgtcatatctctagacaatgtgtaactaaatccaccctatatccaacacagtgaagatgttggaag |
32821649 |
T |
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| Q |
202 |
ctgcaattacaatgaagacaatccaagtgccacaatataaggcggtcagaggaaaaccaaatcaaggtggaatttccgacataaatatatgacccatcca |
301 |
Q |
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| T |
32821650 |
ctgcaattgcaatgaagacaatcaaaatgccacaatataaggcggtcagaggaaaaccaaatcaaggtggaatttccgacataaatatatgacccatcca |
32821749 |
T |
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| Q |
302 |
ttgtttgaatggaaa |
316 |
Q |
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| T |
32821750 |
ttgtttgaatggaaa |
32821764 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 31973507 - 31973579
Alignment:
| Q |
139 |
catatctctagacaatgtgtaactaaatccaccct---atatccaacacaatgaagatgttggaagctgcaat |
208 |
Q |
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| T |
31973507 |
catatctctagacaatgtgggactaaatccaccctttcacacccaacacaatgaaggtgttggaggctgcaat |
31973579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 26642664 - 26642585
Alignment:
| Q |
89 |
gcttgtaaggtaagagcttcttaagttttataaacagtaaacgtgcatgtcatatctctagacaatgtgtaactaaatccaccc |
172 |
Q |
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| T |
26642664 |
gcttgtaaggtgaaggcttcttaaaatttataaacactaca----catgtcatatctctaggcaatgtggaactaaatccaccc |
26642585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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