View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_14 (Length: 298)
Name: NF14051_low_14
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 3922453 - 3922211
Alignment:
| Q |
22 |
gtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgatttctttccaactcaaattggaggtgaacattt |
121 |
Q |
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| T |
3922453 |
gtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgttttctttccaactcaaattggaggtgaacattt |
3922354 |
T |
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| Q |
122 |
gagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctctgatcagt |
221 |
Q |
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| T |
3922353 |
gagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctctgatcagt |
3922254 |
T |
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| Q |
222 |
tggagggatccaagagctacatttatatttttggtgttctgtg |
264 |
Q |
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| T |
3922253 |
tggagggatccaagagctacatttatatttttggtgttctgtg |
3922211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 34958188 - 34958404
Alignment:
| Q |
22 |
gtcacatagatgcaacatta-----tctggtgctgatacaacaaattatgatgatttagaagaagaacttgatttctttccaactcaaattggaggtgaa |
116 |
Q |
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| T |
34958188 |
gtcacatagatgcaacattatattatctggtgctgatacaacaaattctgatgatttagaagaagaacttgatttctttccaactcaaactggaggtgaa |
34958287 |
T |
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| Q |
117 |
catttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctctga |
216 |
Q |
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| T |
34958288 |
gatttgagaaggaggtatgataggttgagagtcattggcaggaatgcacaaaaaagggttgatcaattagctaccattttagaaaagctacaatttctga |
34958387 |
T |
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| Q |
217 |
tcagttggagggatcca |
233 |
Q |
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| T |
34958388 |
tcagttggagggatcca |
34958404 |
T |
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