View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_18 (Length: 247)
Name: NF14051_low_18
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 16286877 - 16287107
Alignment:
| Q |
1 |
ctgttgaaaccatttcaaacttgggaattatgtactatgttttcctaagtggattagagatgaattcagacaccatcttaagatcaagaaagaaaggcac |
100 |
Q |
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| T |
16286877 |
ctgttgaaaccatttcaaacttgggaattatgtactatgttttcctaagtggattagagatgaattcagacaccatcttaagatcaagaaagaaaggcac |
16286976 |
T |
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| Q |
101 |
tagcatggcaattgctggcattgtgacatcaatgttatttggtgttggatttcttactctgcaacaaaaacttctagatnnnnnnnnnnnnnctcatatt |
200 |
Q |
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| T |
16286977 |
tagcatggcaattgctggcattgtgacatcaatgttatttggtgttggatttcttactctgcaacaaaaacttctagataaaaaagaaaaaactcatatt |
16287076 |
T |
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| Q |
201 |
aaagcttatctattttggtgtttaacacttt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16287077 |
aaagcttatctattttggtgtttaacacttt |
16287107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 17262885 - 17262656
Alignment:
| Q |
1 |
ctgttgaaaccatttcaaacttgggaattatgtactatgttttcctaagtggattagagatgaattcagacaccatcttaagatcaagaaagaaaggcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17262885 |
ctgttgaaaccatttcaaacttgggaattatgtactatgttttcctaagtggtttagagatgaattcagacaccatcttaagatcaagaaagaaaggcac |
17262786 |
T |
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| Q |
101 |
tagcatggcaattgctggcattgtgacatcaatgttatttggtgttggatttcttactctgcaacaaaaacttctagatnnnnnnnnnnnnnctcatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
17262785 |
tagcatggcaattgctggcattgtgacatcaatgttatttggtgttggatttcttactctg-aacaaaaacttctagataaaaaagaaaaaactcatatt |
17262687 |
T |
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| Q |
201 |
aaagcttatctattttggtgtttaacacttt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17262686 |
aaagcttatctattttggtgtttaacacttt |
17262656 |
T |
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Back To:
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