View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_2 (Length: 705)
Name: NF14051_low_2
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 697
Target Start/End: Complemental strand, 45709549 - 45708866
Alignment:
| Q |
18 |
ggattttggtttttgggatgttggcttatactgtttgtggtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggattt |
117 |
Q |
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| T |
45709549 |
ggattttggtttttgggatgttggcttatactgtttgtggtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggattt |
45709450 |
T |
|
| Q |
118 |
cttcaaactctcttttgcttctggagttatgctatggtacgttatgacaatctctat----ctcttaatacatgatcatattaagttaatgtctagagcc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45709449 |
cttcaaactctcttttgcttctggagttatgctatggtacgttatgacaatctctatatatctcttaatacatgatcatattaagttaatgtctagagcc |
45709350 |
T |
|
| Q |
214 |
taaatcacgtacgtgcatgtgatgtgatgtgacacaaaattaaatttgtatttcttgaaaggaaaaccttggtgtgcaagtaatatactcctacttatgt |
313 |
Q |
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| T |
45709349 |
taaatcacgtacgtgcatgtgatgtga-----cacaaaattaaatttatatttcttgaaaggaaaaccttggtgtgcaagtaatatactcctacttatgt |
45709255 |
T |
|
| Q |
314 |
tagtgatttgtgcagtttagagaactggtattacaggatactgctacttatgactggccagttggagaatgcgactgttgctgttgatgccttgtctgta |
413 |
Q |
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| T |
45709254 |
tagtgatttgtgcagtttagagaactggtattacaggatactgctacttatgactggccagttggagaatgcgactgttgctgttgatgccttgtctgta |
45709155 |
T |
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| Q |
414 |
tggtaagtattctgtgcctcctcttcctataannnnnnnnnnaaatttaatcagttatttctttattaaaatactactcctagttattaata--nnnnnn |
511 |
Q |
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| T |
45709154 |
tggtaagtattctgtgcctcctcttcctataaaatttcttttaaatttaatcagttatttctttattaaaatactactcctagttattaatatctttttt |
45709055 |
T |
|
| Q |
512 |
nngaaagagtactcctagttattttaattacatcaacaataaaatttaatcaatgtgctcttatatttaaggatggagtactctttg---nnnnnnnnnn |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45709054 |
ttgaaagagtactcctagttattttaattacatcaacaataaaatttaatcaatgtgctcttatatttaaggatggagtactctttgttttttttttttt |
45708955 |
T |
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| Q |
609 |
naagtttaatttacaagtttggtgactaatgtactgaatttatttaattggttttgcagtatgactatcaatgggtgggaaatgatgat |
697 |
Q |
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| T |
45708954 |
taagtttaatttacaagtttggtgactaatgtactgaatttatttaattggttttgcagtatgactatcaatgggtgggaaatgatgat |
45708866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 45718959 - 45718883
Alignment:
| Q |
74 |
tggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgcttctggagttatgct |
150 |
Q |
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|||| |||||||||| ||||||| ||| |||| | ||||||||||| ||||| ||||| |||||||| || ||||| |
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| T |
45718959 |
tggaatggtttttcagttgaagcttttgttggtttatgggatttctttaaactatctttggcttctggtgtcatgct |
45718883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 14092598 - 14092707
Alignment:
| Q |
47 |
actgtttgtggtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgcttctggagtta |
146 |
Q |
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||||||| |||||| |||||||| ||||||| ||| ||||| || || || |||||||| |||||||| || | ||||| ||| ||||||||| |||| |
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| T |
14092598 |
actgtttatggtggttgtcctttgacttggaatgggttttctatggaggctttttctgggctttgggaatttgttaaactttctgctgcttctggtgtta |
14092697 |
T |
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| Q |
147 |
tgctatggta |
156 |
Q |
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| T |
14092698 |
tgctatggta |
14092707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 14104269 - 14104369
Alignment:
| Q |
57 |
gtgggtgtcctttaacttggactggtttttcaattgaagccttttctggtctttgggatttcttcaaactctcttttgcttctggagttatgctatggta |
156 |
Q |
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|||| ||||| |||||||||||||||||||| || || || || | || ||||||||| || ||||||||| ||||||||| |||||||| ||||| |
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| T |
14104269 |
gtggttgtcccttaacttggactggtttttctatggaggctttctttgatctttgggagtttgctaaactctctgctgcttctggggttatgctctggta |
14104368 |
T |
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| Q |
157 |
c |
157 |
Q |
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| T |
14104369 |
c |
14104369 |
T |
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