View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_20 (Length: 215)
Name: NF14051_low_20
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 41716820 - 41717006
Alignment:
| Q |
20 |
gcatagtatccactatcacaaattaaaaatatatagaatttcatcacactcaggaatcaagaacaataatcttaaaacaataacactgagtttttactat |
119 |
Q |
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| T |
41716820 |
gcatagtatccactatcacaaattaaaaatatgtagaatttcatcacactcaggaatcaagaacaataatcttaaaacaataacactgcgtttttactat |
41716919 |
T |
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| Q |
120 |
tttaatttactccaacaaattcaacaataagtaacaataatcccttatacaagaaaaacacttcaaaatctttgttctgtgctcctc |
206 |
Q |
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| T |
41716920 |
tttaatttactccaacaaattcaacaataagtaacaataatcccttatacaagaaaaacacttcaaaatctttgttctaggctcctc |
41717006 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 41648995 - 41649090
Alignment:
| Q |
56 |
aatttcatcacactcaggaatcaagaacaataatcttaaaacaataacactgagtttttactattttaatttactccaacaaattcaacaataagtaaca |
155 |
Q |
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| T |
41648995 |
aatttcataacactcatgcaacatgaacaataatcttaaaacaataagactgagttttcgctattttaa-----cccaacaaaatcaacaataagtaaca |
41649089 |
T |
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