View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_5 (Length: 568)
Name: NF14051_low_5
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 35216412 - 35216960
Alignment:
| Q |
1 |
attgacaaaaaagttgaaagagattcataacgtcacaaatggggtatttggacgggtgtagatacaccaataatgcaagctcgtcaacaaaaatttcgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35216412 |
attgacaaaaaagttgaaagagattcataacgtcacaaatgggatatttagacgggtgtagatacaccaataatgcaagctcgtcaacaaaaatttcgaa |
35216511 |
T |
|
| Q |
101 |
gttgtaaaccaatgataactaaattatttcaagtgaaaatgaatgtgataaacttctaagttaagaagctacattgtttattatctacaaagatttatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35216512 |
gttgtaaaccaatgataactaaattatttaaagtgaaaatgaatgtgataaacttctaagttaagaagctacattgttagttatctacaaagatttatca |
35216611 |
T |
|
| Q |
201 |
ggcagcagaccaccattcaagtaaatggaatgaataatttgccaagaaaggagaaagaatagagttaaaacatacaagcgagaaggtgaagaaagcaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35216612 |
ggcagcagaccaccattcaagtaaatggaatgaataatttgccaagaaaggagaaagaatagagttaaaacatacaagcgtgaaggtgaagaaagcaata |
35216711 |
T |
|
| Q |
301 |
aacatgagaaaaagtgtatgacagtgagaaatacaatcggagaacgcattcacaaagataattttcaattaagatttaattaaattgatgatgatatatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35216712 |
aacatgagaaaaagtgtatgacagtgagaaatacaatcggagaacacattcacaaagataattttcaattaagatttaattaaattgatgatgatatatt |
35216811 |
T |
|
| Q |
401 |
ggttggttattacttatcattaagtttttattagggagttacttatcattaagttactgaacacaattaaaataaaacaaatggaaaagttaagagctaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35216812 |
ggttggttattacttatcattaagtttttattagggagttacttatcattaagttaatgaacacaattaaaataaaacaaatggaaaagttaagagctaa |
35216911 |
T |
|
| Q |
501 |
cctagaatcaggcacaacaatccaattgcaagatcgaccatcatcaccg |
549 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35216912 |
cctataatcaggcacaacaatccaattgcaagatcgaccatcatcaccg |
35216960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 35212894 - 35213075
Alignment:
| Q |
37 |
aaatggggtatttggacgggtgtagatacaccaataatgcaagctcgtcaacaaaaatttcgaagttgtaaaccaatgataactaaattatttcaagtga |
136 |
Q |
| |
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||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35212894 |
aaatggggtatttagacgggtgtagatacactaacaatgcaagctcgtcaacaaaaactccgaagttgtaaaccaatgataacaaaattatttcaagtga |
35212993 |
T |
|
| Q |
137 |
aaatgaatgtgataaacttctaagttaagaagctacattgtttattatctac-aaagatttatcaggcagcagaccaccatt |
217 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||| |||||||||| |||| ||| ||||||||||||| ||| ||||||||||| |
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|
| T |
35212994 |
aaatgattgtgataaacttcttagttaataagatacattgtttgttatatacaaaagatttatcagacagtagaccaccatt |
35213075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 35205853 - 35206010
Alignment:
| Q |
37 |
aaatggggtatttggacgggtgtagatacaccaataatgcaagctcgtcaa-caaaaatttcgaagttgtaaaccaatgataactaaattatttcaagtg |
135 |
Q |
| |
|
||||||||||||| || |||||||||| | || |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
35205853 |
aaatggggtatttagatgggtgtagatgcgataacaatgcaagctcgtcaaacaaaatttttgaagttgtaaaccaatgataactaaattatttcaagtg |
35205952 |
T |
|
| Q |
136 |
aaaatgaatgtgataaacttctaagttaagaagctacattgtttattatctacaaagat |
194 |
Q |
| |
|
||||||| |||||||||||||| |||| | ||||||||||| || |||||||||||||| |
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|
| T |
35205953 |
aaaatgattgtgataaacttctcagtt-ataagctacattgcttgttatctacaaagat |
35206010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 439 - 548
Target Start/End: Original strand, 35213460 - 35213570
Alignment:
| Q |
439 |
ttacttatcattaagttactgaacacaattaaaataaaacaaa-tggaaaagttaagagctaacctagaatcaggcacaacaatccaattgcaagatcga |
537 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || ||| | |||||||||||| |||||||||||||||||||| ||||||| |||||| ||||| |
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|
| T |
35213460 |
ttacttatcattaagttaatgaacacaattaaaatataataaaattgaaaagttaagaactaacctagaatcaggcacatcaatccagttgcaatatcga |
35213559 |
T |
|
| Q |
538 |
ccatcatcacc |
548 |
Q |
| |
|
|||||||||| |
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|
| T |
35213560 |
tcatcatcacc |
35213570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 448 - 548
Target Start/End: Original strand, 35206275 - 35206375
Alignment:
| Q |
448 |
attaagttactgaacacaattaaaataaaacaaatggaaaagttaagagctaacctagaatcaggcacaacaatccaattgcaagatcgaccatcatcac |
547 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||| |||||| ||||| ||||||||| |
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|
| T |
35206275 |
attaagttaataaacacaataaaaataaaacaaaatgaaaatttaagagctaacctataatctggcacaacaatccagttgcaatatcgatcatcatcac |
35206374 |
T |
|
| Q |
548 |
c |
548 |
Q |
| |
|
| |
|
|
| T |
35206375 |
c |
35206375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 448 - 524
Target Start/End: Original strand, 45534293 - 45534369
Alignment:
| Q |
448 |
attaagttactgaacacaattaaaataaaacaaatggaaaagttaagagctaacctagaatcaggcacaacaatcca |
524 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||| |||||| | ||||| |||||||||| | ||||||| |
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|
| T |
45534293 |
attaagttaatgaacacaattaaaataagacaaatagaaaaattaagatcaaacctggaatcaggcatagcaatcca |
45534369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 45533818 - 45533916
Alignment:
| Q |
214 |
cattcaagtaaatggaatgaataatttgccaagaaaggagaaagaatagagttaaaacatacaagcgagaaggtgaagaaagcaataaacatgagaaaa |
312 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||| ||||||||| | ||||||||| |||| |||||||| |||||| ||||||| |||||||| |
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|
| T |
45533818 |
cattcaatgaaatggaatgaacaattcgccaagaaatgagaaagaacaattttaaaacatgcaagagagaaggtaaagaaaccaataaaagtgagaaaa |
45533916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 35213413 - 35213476
Alignment:
| Q |
358 |
ataattttcaattaagatttaattaaattgatgatgatatattggttggttattacttatcattaagtt |
426 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
35213413 |
ataactttcaattaagatttaattaaattgatgatgat-----ggctggctattacttatcattaagtt |
35213476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 35475916 - 35475977
Alignment:
| Q |
453 |
gttactgaacacaattaaaataaaacaaatggaaaagttaagagctaacctagaatcaggca |
514 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
35475916 |
gttaatgaacacaagaaaaataaaacaaatataaaacttaagagctaacctagactcaggca |
35475977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 35213355 - 35213397
Alignment:
| Q |
241 |
gccaagaaaggagaaagaatagagttaaaacatacaagcgaga |
283 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
35213355 |
gccaagaaaggagaatgaatagagtttaaacatacaagggaga |
35213397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 35476768 - 35476898
Alignment:
| Q |
34 |
cacaaatggggtatttggacgggtgtagatacaccaataatgcaagctcgtcaacaaaaatttcgaagttgtaaaccaatgataactaaattatttcaag |
133 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||| |||||| | || | || ||||||| |||||||||||||| | |||| ||||| ||||||| |
|
|
| T |
35476768 |
cacaaatggagtatttatagaggtgtagatacaccaacaatgcatggtcattgactaaaatttgaaagttgtaaaccaagggtaacaaaattgtttcaag |
35476867 |
T |
|
| Q |
134 |
tgaaaatgaatgtgataaacttctaagttaa |
164 |
Q |
| |
|
|| || ||| | |||||| |||| |||||| |
|
|
| T |
35476868 |
tgtaattgattatgataagattctcagttaa |
35476898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 514
Target Start/End: Original strand, 35222706 - 35222742
Alignment:
| Q |
478 |
caaatggaaaagttaagagctaacctagaatcaggca |
514 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |
|
|
| T |
35222706 |
caaatggaaaagttaagaacaaacctagaatcaggca |
35222742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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