View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14051_low_6 (Length: 567)

Name: NF14051_low_6
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14051_low_6
NF14051_low_6
[»] chr1 (3 HSPs)
chr1 (1-550)||(7554822-7555372)
chr1 (106-249)||(19467418-19467561)
chr1 (202-249)||(30827724-30827771)
[»] chr6 (16 HSPs)
chr6 (54-504)||(9411801-9412242)
chr6 (69-175)||(6417092-6417198)
chr6 (125-247)||(6596241-6596360)
chr6 (105-228)||(11936024-11936147)
chr6 (105-228)||(11948004-11948127)
chr6 (125-175)||(28935338-28935388)
chr6 (95-156)||(7132324-7132385)
chr6 (95-156)||(7135247-7135308)
chr6 (95-156)||(7138170-7138231)
chr6 (125-173)||(6423907-6423955)
chr6 (197-249)||(10579173-10579225)
chr6 (204-249)||(6436837-6436882)
chr6 (204-249)||(7993631-7993676)
chr6 (125-173)||(6395539-6395587)
chr6 (133-173)||(6427183-6427223)
chr6 (441-497)||(6588601-6588657)
[»] chr4 (22 HSPs)
chr4 (71-508)||(8186311-8186745)
chr4 (54-249)||(1755479-1755674)
chr4 (126-249)||(571256-571379)
chr4 (61-175)||(553759-553873)
chr4 (52-249)||(7225094-7225290)
chr4 (383-502)||(21833568-21833687)
chr4 (306-409)||(1481523-1481626)
chr4 (95-173)||(661860-661938)
chr4 (384-502)||(1601179-1601300)
chr4 (90-244)||(21833248-21833402)
chr4 (55-149)||(53760229-53760323)
chr4 (53-162)||(1495619-1495728)
chr4 (95-243)||(641939-642087)
chr4 (95-177)||(55907651-55907733)
chr4 (472-505)||(7225501-7225534)
chr4 (126-243)||(7308483-7308600)
chr4 (129-177)||(3437630-3437678)
chr4 (472-504)||(8183638-8183670)
chr4 (383-502)||(7308230-7308349)
chr4 (54-156)||(1545883-1545985)
chr4 (210-243)||(2373565-2373598)
chr4 (213-249)||(2621502-2621538)
[»] chr7 (4 HSPs)
chr7 (69-243)||(10615645-10615819)
chr7 (80-249)||(10169011-10169180)
chr7 (80-249)||(10176536-10176705)
chr7 (54-249)||(7977799-7977994)
[»] chr8 (11 HSPs)
chr8 (130-243)||(32151900-32152013)
chr8 (101-249)||(18314620-18314768)
chr8 (93-249)||(14004069-14004225)
chr8 (56-175)||(17642872-17642991)
chr8 (126-249)||(21236080-21236203)
chr8 (51-175)||(17635588-17635712)
chr8 (339-499)||(18314854-18315014)
chr8 (105-227)||(28246044-28246166)
chr8 (54-156)||(34935922-34936024)
chr8 (93-177)||(5766579-5766663)
chr8 (126-174)||(18318650-18318698)
[»] chr3 (8 HSPs)
chr3 (69-243)||(13469599-13469773)
chr3 (383-507)||(513939-514063)
chr3 (105-228)||(1657474-1657597)
chr3 (53-249)||(51113131-51113327)
chr3 (395-502)||(51763672-51763779)
chr3 (121-170)||(51120658-51120707)
chr3 (54-175)||(51763325-51763446)
chr3 (207-249)||(51763487-51763529)
[»] scaffold1155 (1 HSPs)
scaffold1155 (53-156)||(1820-1923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (53-156)||(8293-8396)
[»] scaffold0105 (1 HSPs)
scaffold0105 (53-156)||(30583-30686)
[»] chr2 (1 HSPs)
chr2 (95-177)||(1036587-1036669)
[»] chr5 (6 HSPs)
chr5 (109-197)||(41900484-41900572)
chr5 (309-420)||(28673460-28673571)
chr5 (198-246)||(17205662-17205710)
chr5 (111-175)||(28532813-28532877)
chr5 (309-420)||(28695710-28695821)
chr5 (146-197)||(32268513-32268564)


Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 7555372 - 7554822
Alignment:
Q  1 cacctcccttgtcttcgctcgcaactgccgtgatatcgacaagctacttagcgaaatctcttgtttcccattgaacctaacatcacttgatatttccaac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555372 cacctcccttgtcttcgctcgcaactgccttgatatcgacaagctacttagcgaaatctcttgtttcccattgaacctaacatcacttgatatttccaac 7555273  T
Q  101 caacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555272 caacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatg 7555173  T
Q  201 acttgttactcattgctgaatgtttccctttgctcgaagaactcaacctgggttatccccgtaataaatttaaggatcatagtaacttccttaatgggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555172 acttgttactcattgctgaatgtttccctttgctcgaagaactcaacctgggttatccccgtaataaatttaaggatcatagtaacttccttaatgggtt 7555073  T
Q  301 ggagactctttcattggcactttccaaactcaccaggattaatctctctgaacattactacatcaacgacatatcacttgttcacttgtttaagaactgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555072 ggagactctttcattggcactttccaaactcaccaggattaatctctctgaccattactacatcaacgacatatcacttgttcacttgtttaagaactgc 7554973  T
Q  401 aagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggca-ttttttcagctctccatgagagaccaacattgaggtctttatcc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7554972 aagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagctggcatttttttcagctctccatgagagaccaacattgaggtctttatcc 7554873  T
Q  500 tttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcattaag 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7554872 tttaccgatcacgaatcaagaaacttcgcaacgctgtttgcactcgttaag 7554822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 19467418 - 19467561
Alignment:
Q  106 caccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttg 205  Q
    |||||| || |||| ||| ||||||| |||| | ||||||||||||||||| ||||| |||||||||| | | || |    | |||||| || |||| ||    
T  19467418 caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtttcgacattgcagatttcaataccactgacctg 19467517  T
Q  206 ttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    || ||||| || |||||||| |||||||||||||||||||||||    
T  19467518 ttcctcatcgcggaatgttttcctttgctcgaagaactcaacct 19467561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 30827771 - 30827724
Alignment:
Q  202 cttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||||||||||||||| || ||||||||||||||| || ||||||||||    
T  30827771 cttgttactcattgccgattgtttccctttgctcaaacaactcaacct 30827724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 54 - 504
Target Start/End: Complemental strand, 9412242 - 9411801
Alignment:
Q  54 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 153  Q
    |||||||| |||| |||||||| ||  |||||||| || | |||||||| | |||||| || ||   ||| |||||||||||||||||||||||||||||    
T  9412242 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 9412146  T
Q  154 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacctgggt 253  Q
    |||||||||| ||||||  || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  9412145 tttaacctcattcacttcctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacctgtgt 9412046  T
Q  254 tatccccgtaataaatttaaggatcatagtaacttccttaatgggttggagactctttcattggcactttccaaactcaccaggattaatctctctgaac 353  Q
    ||||||||   ||||||||||||||||||   ||| |||||| || | ||||||||||||||| |||||| ||||||||||| ||||||||||||||  |    
T  9412045 tatccccg---taaatttaaggatcatag---ctttcttaatagggtagagactctttcattgacacttttcaaactcaccaagattaatctctctggtc 9411952  T
Q  354 attactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcagg 453  Q
    || ||||||||||||||| ||||||  |  |||||||||||||||| |||||||||||||||||||||||||||   |||  | ||||||||||||  ||    
T  9411951 atcactacatcaacgacacatcactcttcaacttgtttaagaactgtaagcttctccaagaggttatcatgtttcgctgtcgtagcataaccaaagttgg 9411852  T
Q  454 cattttttcagctctccatgagagaccaacattgaggtctttatcctttac 504  Q
    |||| |||| ||||||  |||||||||||| ||||||||||| ||||||||    
T  9411851 cattgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttac 9411801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 6417198 - 6417092
Alignment:
Q  69 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 168  Q
    |||||||| | ||||||||| |||| ||||||||||||||  | || | || ||| || ||||||||||||||||| | ||||||||| ||||| |||||    
T  6417198 cattgaacatcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcac 6417099  T
Q  169 ttgttcc 175  Q
    |||||||    
T  6417098 ttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 6596241 - 6596360
Alignment:
Q  125 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtt 224  Q
    ||||||| |||||||||||| || |||||||| ||||| ||||||||||| | ||   | | | || | |  ||||||||||||||||||||||| ||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataa---actttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  225 tccctttgctcgaagaactcaac 247  Q
    |||| |||||| |||||||||||    
T  6596338 tcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 11936024 - 11936147
Alignment:
Q  105 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 204  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11936024 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11936123  T
Q  205 gttactcattgctgaatgtttccc 228  Q
    ||| ||||||||||| ||||||||    
T  11936124 gttcctcattgctgattgtttccc 11936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 11948004 - 11948127
Alignment:
Q  105 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 204  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11948004 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11948103  T
Q  205 gttactcattgctgaatgtttccc 228  Q
    ||| ||||||||||| ||||||||    
T  11948104 gttcctcattgctgattgtttccc 11948127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 28935388 - 28935338
Alignment:
Q  125 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 175  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  28935388 ttgcgagccttctcccaaaacattacaactttaacctcactcacatgttcc 28935338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 7132385 - 7132324
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 156  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7132385 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 7135308 - 7135247
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 156  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7135308 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 7138231 - 7138170
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 156  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7138231 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7138170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 6423955 - 6423907
Alignment:
Q  125 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 173  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  6423955 ttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 10579173 - 10579225
Alignment:
Q  197 aatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||||||||||||||| |||| || |||||||| |||||| |||||||||||||    
T  10579173 aatgacttgttactcgttgccgattgtttcccattgctcaaagaactcaacct 10579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 6436882 - 6436837
Alignment:
Q  204 tgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||||||||||||| || ||||||||||||||| || ||||||||||    
T  6436882 tgttactcattgccgattgtttccctttgctcaaacaactcaacct 6436837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 7993631 - 7993676
Alignment:
Q  204 tgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    |||||||||||||  | ||||||||||||||| |||||||||||||    
T  7993631 tgttactcattgccaattgtttccctttgctcaaagaactcaacct 7993676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 6395587 - 6395539
Alignment:
Q  125 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 173  Q
    |||| |||| |||||||||||||||||||||| ||||| |||| |||||    
T  6395587 ttgcaagctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
Q  133 tttctcccaaaatattacaactttaacctcactcacttgtt 173  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 6588601 - 6588657
Alignment:
Q  441 taaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctttat 497  Q
    ||||||| |||||||||  ||| ||||||| ||||||||||| ||||| ||||||||    
T  6588601 taaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtctttat 6588657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 71 - 508
Target Start/End: Original strand, 8186311 - 8186745
Alignment:
Q  71 ttgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcactt 170  Q
    |||||||| ||||||||  || | || ||| |||||||||| ||||||| ||||||||||| | |||||| ||||||||||||||| ||||||||||| |    
T  8186311 ttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacat 8186410  T
Q  171 gttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacctgggttatccccgtaataaatt 270  Q
    ||||||| || || ||||||||||||| |||| | || ||||| || || ||||| ||||| || ||||||||| | ||  || |   || |||  | ||    
T  8186411 gttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcgatctcagtaa---ccctaaagagtt 8186507  T
Q  271 taaggatcatagtaacttccttaatgggttggagactctttcattggcactttccaaactcaccaggattaatctctctgaacattactacatcaacgac 370  Q
     ||  |||  |||| |||| || ||||  | ||| |||||||||||||||||| ||||||   || | ||||||| ||| | ||| |||| |||||||||    
T  8186508 caacaatctcagtatcttctttgatggagttgaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgac 8186607  T
Q  371 atatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctcc 470  Q
    | ||  ||| |||||||||| ||||| || |||| |||| ||||||||||||||||| |||||  |    |||||||||||||||||  ||| || ||      
T  8186608 aaattgctttttcacttgttaaagaattgtaagcatctcgaagaggttatcatgtttaagtgttctcagttaaccaaagcaggcattgcttctgccctat 8186707  T
Q  471 atgagagaccaacattgaggtctttatcctttaccgat 508  Q
      ||||||||||| ||||||||||||||||||||||||    
T  8186708 gggagagaccaacgttgaggtctttatcctttaccgat 8186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 1755674 - 1755479
Alignment:
Q  54 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 153  Q
    |||||||| ||||||||||||| || |||||  || || | |||||||||| | |||| ||  | |  || |||| ||||||||| ||||| ||||||||    
T  1755674 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaac 1755575  T
Q  154 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||| ||||| ||||| |||||||| || | |  | || ||| ||||||||| || ||||||||||| |||||||||||||| ||||||||||||||    
T  1755574 tttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccctttgcttgaagaactcaacct 1755479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 571379 - 571256
Alignment:
Q  126 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 225  Q
    ||||||| ||||||||||||||||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||||||| |||||  | || |||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgttt 571280  T
Q  226 ccctttgctcgaagaactcaacct 249  Q
    ||||||||||||||||||| ||||    
T  571279 ccctttgctcgaagaactccacct 571256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 553873 - 553759
Alignment:
Q  61 ttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacc 160  Q
    |||||| ||||||||||| |||||||| ||| | ||| |  |||||||||| || |||| ||| |||||||||||||||||||| ||||||||||| |||    
T  553873 ttgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacc 553774  T
Q  161 tcactcacttgttcc 175  Q
    || ||||| ||||||    
T  553773 tctctcacctgttcc 553759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 249
Target Start/End: Original strand, 7225094 - 7225290
Alignment:
Q  52 cgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattaca 151  Q
    |||||||||| |||| |||||||| || ||||||||| |||| || ||  || ||| ||| || |||  ||| |||| |||| | || ||||||||||||    
T  7225094 cgaaatctctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattaca 7225193  T
Q  152 actttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||||| ||||| ||||| ||||||| | |  ||||| ||| ||||| |||| |||| ||||| || || |||||||||||||||||||||||| ||||    
T  7225194 actttgacctctctcacatgttccacattt-attctgtcactagcactgacatgttcctcatcgcggattgtttccctttgctcgaagaactcgacct 7225290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 383 - 502
Target Start/End: Original strand, 21833568 - 21833687
Alignment:
Q  383 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa 482  Q
    |||||| | ||||| || ||||||||  ||||||| ||||||||||| ||||||   |||| || || |||||||  ||||||||||| |||||||||||    
T  21833568 cacttgctaaagaattgtaagcttcttgaagaggtcatcatgtttgattgtgatcaaataagcagagaaggcattgcttcagctctccgtgagagaccaa 21833667  T
Q  483 cattgaggtctttatccttt 502  Q
    ||||||| ||||||||||||    
T  21833668 cattgagttctttatccttt 21833687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 306 - 409
Target Start/End: Complemental strand, 1481626 - 1481523
Alignment:
Q  306 ctctttcattggcactttccaaactcaccaggattaatctctctgaacattactacatcaacgacatatcacttgttcacttgtttaagaactgcaagct 405  Q
    |||||||||||||||| | |||||||  || | ||||||||||||| ||||||||| |||||||||| |  ||| |||| ||||| |||||||||||| |    
T  1481626 ctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgctttttcaattgttcaagaactgcaagtt 1481527  T
Q  406 tctc 409  Q
    ||||    
T  1481526 tctc 1481523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 661938 - 661860
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 173  Q
    ||||||||| ||||||| || || | ||| |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  661938 tccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgtt 661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 502
Target Start/End: Complemental strand, 1601300 - 1601179
Alignment:
Q  384 acttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttt---tcagctctccatgagagacc 480  Q
    ||||||||||||||| ||||| |||  ||||||| |||||| | || ||| |||| |||||| | || | |||| ||   || ||||||| |||||||||    
T  1601300 acttgtttaagaacttcaagcatcttgaagaggtcatcatgctcgactgttatggaataaccgatgctgacattgttgcttctgctctccgtgagagacc 1601201  T
Q  481 aacattgaggtctttatccttt 502  Q
    ||||||||||||||||||||||    
T  1601200 aacattgaggtctttatccttt 1601179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 21833248 - 21833402
Alignment:
Q  90 atatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctat 189  Q
    |||| |||||| |||||||||| || |||  ||| ||||||| |||  | ||||| ||||| ||||| ||||| ||||||||||||||||| | |  | |    
T  21833248 atatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaattt 21833347  T
Q  190 caatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactc 244  Q
    ||||| || |||| |||| ||||| |  ||||||||||| |||| ||||||||||    
T  21833348 caataccactgacctgttcctcatcgtcgaatgtttccccttgcacgaagaactc 21833402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 53760229 - 53760323
Alignment:
Q  55 aatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatatta 149  Q
    ||||||| ||||||||||||| || ||||||||  || | ||||||||| |||| |||| ||||| ||| ||||||||||||| |||||| ||||    
T  53760229 aatctctcgtttcccattgaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttgcgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 1495619 - 1495728
Alignment:
Q  53 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 152  Q
    |||||||||  ||| ||||||||  | ||||| |||||| | ||  |||||||||| || ||||| || |||||||||  |||||||||||| |||||||    
T  1495619 gaaatctctctttttccattgaaaatcacatcccttgatttatctgaccaacccacgattcctgctataggattgcgatatttctcccaaaaaattacaa 1495718  T
Q  153 ctttaacctc 162  Q
    ||||||||||    
T  1495719 ctttaacctc 1495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 642087 - 641939
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaata 194  Q
    ||||||| | ||||||| ||||| | ||| |||| | |||||||||| || ||| |||||||||| || ||||  |||||||||||| |||| || || |    
T  642087 tccaaccgatccaccattcctgctaatgggttgcaatctttctcccagaagatttcaactttaacttctctcaaatgttccaaaatgaattccataaaaa 641988  T
Q  195 gcaatgacttgttactcattgctgaatgtttccctttgctcgaagaact 243  Q
     ||  |||||||| || |||||  | ||||||||||| |||||||||||    
T  641987 acaccgacttgttccttattgccaattgtttccctttactcgaagaact 641939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 55907651 - 55907733
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 177  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| |  || |||| |||||||||    
T  55907651 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 7225501 - 7225534
Alignment:
Q  472 tgagagaccaacattgaggtctttatcctttacc 505  Q
    ||||||||||||||||||||||||||||||||||    
T  7225501 tgagagaccaacattgaggtctttatcctttacc 7225534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 7308600 - 7308483
Alignment:
Q  126 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 225  Q
    |||||||||| ||||| || ||||||||||| ||||  |||||||||||| | ||   ||||||| ||| || |||| ||||||| ||||| || |||||    
T  7308600 tgcgagctttgtcccagaagattacaactttgacctgtctcacttgttcccacattagttctatccataacactgacatgttacttattgccgagtgttt 7308501  T
Q  226 ccctttgctcgaagaact 243  Q
     ||| | |||||||||||    
T  7308500 tcctctactcgaagaact 7308483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  129 gagctttctcccaaaatattacaactttaacctcactcacttgttccaa 177  Q
    |||||||||||||||| ||||||||||| ||||| |||| |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 504
Target Start/End: Original strand, 8183638 - 8183670
Alignment:
Q  472 tgagagaccaacattgaggtctttatcctttac 504  Q
    |||||||||||||||||||||||||||||||||    
T  8183638 tgagagaccaacattgaggtctttatcctttac 8183670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 502
Target Start/End: Complemental strand, 7308349 - 7308230
Alignment:
Q  383 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa 482  Q
    |||||||||||||| || ||||||||  ||||||  ||||| || || ||| ||    ||||||| |||||||||  | | ||||| |||||||||||||    
T  7308349 cacttgtttaagaattgtaagcttctggaagaggccatcatattagactgtcatcaactaaccaacgcaggcattgctactgctctacatgagagaccaa 7308250  T
Q  483 cattgaggtctttatccttt 502  Q
    ||||| | ||||||||||||    
T  7308249 cattgcgctctttatccttt 7308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 1545985 - 1545883
Alignment:
Q  54 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 153  Q
    ||||||||  ||| |||||||| || ||| |||||| | ||||   |||| |||| |||||||| | ||| |||||| ||||||| ||||||||||||||    
T  1545985 aaatctctacttttccattgaaactcacaacacttgttctttctgtccaagccactatccctgccaatgggttgcgatctttctctcaaaatattacaac 1545886  T
Q  154 ttt 156  Q
    |||    
T  1545885 ttt 1545883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 2373565 - 2373598
Alignment:
Q  210 tcattgctgaatgtttccctttgctcgaagaact 243  Q
    |||||||||| |||||||||||||||||||||||    
T  2373565 tcattgctgattgtttccctttgctcgaagaact 2373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 2621502 - 2621538
Alignment:
Q  213 ttgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  2621502 ttgctgattgtttccctttactcgaagaactcaacct 2621538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 10615819 - 10615645
Alignment:
Q  69 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 168  Q
    |||||||| | ||||||||| |||||||||||||||||||  | || |||| ||| || ||||||||||||||||| ||||||||||| ||||| |||||    
T  10615819 cattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcac 10615720  T
Q  169 ttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaact 243  Q
    ||||||| | || | |    ||||||| | |||  |||| || ||||| |||||||||||||| |||||||||||    
T  10615719 ttgttcccacatcgctaacttcaatagtagtgatctgttccttattgcagaatgtttccctttactcgaagaact 10615645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 10169011 - 10169180
Alignment:
Q  80 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaa 179  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| |||||||||||| | |    
T  10169011 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgaca 10169110  T
Q  180 tggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    | |||  | | ||||  | ||||||||| || || || |||||||| |||||||| ||||||||||||||    
T  10169111 ttgatgattttaatactactgacttgtttcttatcgcagaatgttttcctttgcttgaagaactcaacct 10169180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 10176536 - 10176705
Alignment:
Q  80 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaa 179  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| |||||||||||| | |    
T  10176536 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccgaca 10176635  T
Q  180 tggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    | |||  | | ||||  | ||||||||| || || || |||||||| |||||||| ||||||||||||||    
T  10176636 ttgatgattttaatactactgacttgtttcttatcgcagaatgttttcctttgcttgaagaactcaacct 10176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 7977994 - 7977799
Alignment:
Q  54 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 153  Q
    |||| |||||||||||||||||  | || |||||  || | |||||||| || ||||| || ||   ||| |||| || |||||||||||||||| ||||    
T  7977994 aaatttcttgtttcccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaac 7977895  T
Q  154 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||| ||||||||||  ||||| || || || ||||| |||| |||  || |||| ||||| || || |||||||||||||| ||||||||| ||||    
T  7977894 tttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccctttgcttgaagaactcgacct 7977799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 32152013 - 32151900
Alignment:
Q  130 agctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccct 229  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    ||  ||||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  230 ttgctcgaagaact 243  Q
    ||||||||||||||    
T  32151913 ttgctcgaagaact 32151900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 18314620 - 18314768
Alignment:
Q  101 caacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatg 200  Q
    ||||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| ||||||||| | |||||  | ||  | ||| || || ||| ||    
T  18314620 caacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactg 18314719  T
Q  201 acttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    |  | || ||||||||||| |||||||||||||||||||||||| ||||    
T  18314720 atctcttcctcattgctgattgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 14004225 - 14004069
Alignment:
Q  93 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaa 192  Q
    ||||||||||||||| | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||  |  ||||| | ||    
T  14004225 tttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaa 14004126  T
Q  193 tagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    ||||| |||  |    ||||||||||| ||||| |||||||| ||||||||| ||||    
T  14004125 tagcactgatctccatctcattgctgattgttttcctttgctagaagaactcgacct 14004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 17642872 - 17642991
Alignment:
Q  56 atctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactt 155  Q
    ||||||||||| |||||||| || ||||||||  || | |||||||| | |||||| ||  | | ||| || | |||||||||||| |||||||||||||    
T  17642872 atctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactt 17642971  T
Q  156 taacctcactcacttgttcc 175  Q
    | ||||| ||||||||||||    
T  17642972 tgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 21236203 - 21236080
Alignment:
Q  126 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 225  Q
    ||||||| ||||||||||||| ||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||| ||| |||||  | || |||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgactagttgctcatctcggactgttt 21236104  T
Q  226 ccctttgctcgaagaactcaacct 249  Q
    | ||||||||||||||||| ||||    
T  21236103 ctctttgctcgaagaactccacct 21236080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 17635588 - 17635712
Alignment:
Q  51 gcgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattac 150  Q
    |||||||||||  ||| |||||||| || | ||||||  || | |||||||||| |||||| ||  | | ||| || |||||||||||||  ||||||||    
T  17635588 gcgaaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattac 17635687  T
Q  151 aactttaacctcactcacttgttcc 175  Q
    |||||| ||||| ||||||||||||    
T  17635688 aactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 499
Target Start/End: Original strand, 18314854 - 18315014
Alignment:
Q  339 ttaatctctctgaacattactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatgg 438  Q
    ||||| || |||| |||||||||||||||||   ||| ||| | |||||||| |||||||| ||||||||| |||||   ||||| ||| | ||| ||      
T  18314854 ttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatattttactgtcatca 18314953  T
Q  439 cataaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctttatcc 499  Q
     |||||||| || || |||  ||  ||||||| |||||||||||| |||||||||||||||    
T  18314954 aataaccaacgcgggtattgcttttgctctccgtgagagaccaactttgaggtctttatcc 18315014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 28246044 - 28246166
Alignment:
Q  105 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 204  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| |||||  |||||   || || ||||||||| ||| |||| |    
T  28246044 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgcgttccttcattgaatctatcaatcgcactgacct 28246143  T
Q  205 gttactcattgctgaatgtttcc 227  Q
    ||| ||||||| ||| |||||||    
T  28246144 gttcctcattgttgattgtttcc 28246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 34935922 - 34936024
Alignment:
Q  54 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 153  Q
    |||| ||| |||||||||||||||| ||||||||  || | |||||||| |||| ||| ||   || ||| ||||||| |||||| ||||||||||||||    
T  34935922 aaatttctagtttcccattgaaccttacatcactcaatctctccaaccatcccatcattccacaaaatggtttgcgagttttctcacaaaatattacaac 34936021  T
Q  154 ttt 156  Q
    |||    
T  34936022 ttt 34936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 5766579 - 5766663
Alignment:
Q  93 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 177  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  5766579 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 5766663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 18318650 - 18318698
Alignment:
Q  126 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttc 174  Q
    |||||| ||||| | |||||||||||||||| ||||||||||| |||||    
T  18318650 tgcgagttttctgcaaaaatattacaactttgacctcactcacatgttc 18318698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 13469599 - 13469773
Alignment:
Q  69 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 168  Q
    |||||||| | ||||||||| || | ||||||||||||||  | ||||||| ||| || ||||||||||||||||| | ||||||  | ||||| |||||    
T  13469599 cattgaacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcac 13469698  T
Q  169 ttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaact 243  Q
    ||||||| | || | |  | ||||||||| |||| |||| || ||||| |||||||| || ||||| ||||||||    
T  13469699 ttgttcccacattgctaatttcaatagcagtgacctgttccttattgcagaatgttttccgttgcttgaagaact 13469773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 507
Target Start/End: Original strand, 513939 - 514063
Alignment:
Q  383 cacttgtttaagaactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaa 482  Q
    |||||||| || ||||| |||||||| |||||||||||||| ||| | || ||| |||||||||||  ||| |||  ||| ||||||| |||||||||||    
T  513939 cacttgttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctccgtgagagaccaa 514038  T
Q  483 cattgaggtctttatcctttaccga 507  Q
    ||||||  ||| |||||||| ||||    
T  514039 cattgacctctatatccttttccga 514063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 1657597 - 1657474
Alignment:
Q  105 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 204  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  1657597 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 1657498  T
Q  205 gttactcattgctgaatgtttccc 228  Q
    ||| ||||||||||| ||||||||    
T  1657497 gttcctcattgctgattgtttccc 1657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 249
Target Start/End: Original strand, 51113131 - 51113327
Alignment:
Q  53 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 152  Q
    ||||||||| ||||||||||||| || || |||||  |||| |||||| ||  ||  || ||  ||| ||||||||||||||||||  ||||||||||||    
T  51113131 gaaatctctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaa 51113230  T
Q  153 ctttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    || | ||||| |||||||||||  | ||   || |||||| ||||  ||||||||  |||| |||||||| ||||||||  | ||||||||| ||||    
T  51113231 ctctgacctctctcacttgttcgcacataagttgtatcaacagcaccgacttgttggtcatcgctgaatgcttccctttatttgaagaactcgacct 51113327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 502
Target Start/End: Original strand, 51763672 - 51763779
Alignment:
Q  395 aactgcaagcttctccaagaggttatcatgtttgagtgtgatggcataaccaaagcaggcattttttcagctctccatgagagaccaacattgaggtctt 494  Q
    ||||| |||||||||||||| || ||||||||||| ||||||   |||||||| |||||  |   ||| ||||||| ||| ||||||||||||| |||||    
T  51763672 aactgtaagcttctccaagatgtcatcatgtttgactgtgatcaaataaccaatgcaggagtcacttctgctctccgtgaaagaccaacattgacgtctt 51763771  T
Q  495 tatccttt 502  Q
    ||||||||    
T  51763772 tatccttt 51763779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 51120658 - 51120707
Alignment:
Q  121 tggattgcgagctttctcccaaaatattacaactttaacctcactcactt 170  Q
    |||||||||||||||||| |||||| |||||||||| || ||||||||||    
T  51120658 tggattgcgagctttctctcaaaatgttacaactttgacttcactcactt 51120707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 51763325 - 51763446
Alignment:
Q  54 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 153  Q
    |||||||| ||||||||||||| || ||||||||| || | ||||| || |  ||| | ||| ||| ||| ||||||| ||| || ||||| ||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  154 tttaacctcactcacttgttcc 175  Q
    ||| || || ||||||||||||    
T  51763425 tttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 51763487 - 51763529
Alignment:
Q  207 tactcattgctgaatgtttccctttgctcgaagaactcaacct 249  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||    
T  51763487 tactcattgcggaatgtttcccattgctcgaagaactcgacct 51763529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 1820 - 1923
Alignment:
Q  53 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 152  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  1820 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 1919  T
Q  153 cttt 156  Q
    ||||    
T  1920 cttt 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 8396 - 8293
Alignment:
Q  53 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 152  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  8396 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 8297  T
Q  153 cttt 156  Q
    ||||    
T  8296 cttt 8293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 30583 - 30686
Alignment:
Q  53 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 152  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  30583 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 30682  T
Q  153 cttt 156  Q
    ||||    
T  30683 cttt 30686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 1036587 - 1036669
Alignment:
Q  95 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 177  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  1036587 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 41900484 - 41900572
Alignment:
Q  109 catccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 197  Q
    |||||| ||| |||| || |||||||| ||| |||| ||||||||||| ||||| |||||||||| | ||||| ||| |||||||||||    
T  41900484 catccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaaatgcattatatcaatagca 41900572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 420
Target Start/End: Original strand, 28673460 - 28673571
Alignment:
Q  309 tttcattggcactttccaaactcaccaggattaatctctctgaacattactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttct 408  Q
    |||||||| |||||| |||||||  || | ||||||||||| | ||| ||||||||||||||  ||||||| | || ||| | || ||||| ||||||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaacaactgtaagcttct 28673559  T
Q  409 ccaagaggttat 420  Q
    | ||||||||||    
T  28673560 cgaagaggttat 28673571  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 17205710 - 17205662
Alignment:
Q  198 atgacttgttactcattgctgaatgtttccctttgctcgaagaactcaa 246  Q
    ||||| ||||||||||||| || ||||||||||||||| ||||||||||    
T  17205710 atgacctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 28532877 - 28532813
Alignment:
Q  111 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 175  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  28532877 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 28532813  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 420
Target Start/End: Original strand, 28695710 - 28695821
Alignment:
Q  309 tttcattggcactttccaaactcaccaggattaatctctctgaacattactacatcaacgacatatcacttgttcacttgtttaagaactgcaagcttct 408  Q
    |||||||| |||||| |||||||  || | |||||||||||   ||| |||||||||||| |  | ||||| | |||||| | || ||||||||||||||    
T  28695710 tttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaactgcaagcttct 28695809  T
Q  409 ccaagaggttat 420  Q
    | ||||||||||    
T  28695810 cgaagaggttat 28695821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 32268564 - 32268513
Alignment:
Q  146 attacaactttaacctcactcacttgttccaaaatggattctatcaatagca 197  Q
    ||||||||||| ||||| |||||||||||||||||| | | |||||||||||    
T  32268564 attacaactttgacctctctcacttgttccaaaatgcaatatatcaatagca 32268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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