View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_7 (Length: 462)
Name: NF14051_low_7
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 15806493 - 15806051
Alignment:
| Q |
1 |
tcatcgtagtaagtgtgcttgtcgcagtagctctactaagttgctatggctactattactggaaaaagaaaggattaagtgaaggtaaatataacaagtt |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15806493 |
tcatcgtagtaagtgtgcttgtggcagtagctctactaagttgctatggctactattactggaaaaagaaaggattaagtgaaggtaaatataacaagtt |
15806394 |
T |
|
| Q |
101 |
acataatgttgagaattctataagcccatttcataattatctatgataaaaagtcactatttagacttactatcttccttgttaggtggtttgctgttga |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15806393 |
acataatgttgagaattctataagcccatttcacaattatctatgataaaaagtcactatttagacttactatcttccttcttaggtggtttgctgttga |
15806294 |
T |
|
| Q |
201 |
gaaccgttacgcccatgtctttccgtgatcatgttcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccac |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15806293 |
gaaccgttacgccgatgtctttccgtgatcatgttcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccac |
15806194 |
T |
|
| Q |
301 |
ggataacttttcagagtcatctaaattaggagaaggtggatttggccctgtttacaaggtttgaatacattgtatcctgaagtctatcaatgcatttata |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||| | ||||| |
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| T |
15806193 |
ggataacttttcagagtcatctaaattaggagaaggtggatttggccctgtttacaaggtatgaataaattgtatccagaagtcaatcaatgaagttata |
15806094 |
T |
|
| Q |
401 |
gttttgcattataattttgagagattcatctgtttaccagggtact |
446 |
Q |
| |
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|||||| || ||| || |||||||||||||||||||||||||| |
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| T |
15806093 |
gttttgatttttaactt---gagattcatctgtttaccagggtact |
15806051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 360
Target Start/End: Complemental strand, 15814252 - 15814028
Alignment:
| Q |
135 |
aattatctatgataaaaagtcactatttagacttactatcttccttgttaggtggtttgctgttgagaaccgttacgcccatgtctttccgtgatcatgt |
234 |
Q |
| |
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||||| |||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||| || ||| |||| || | |||||||||||| ||||| |
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| T |
15814252 |
aattacctatgaaaaaaagtcactatttagacatacta-cttccttgtcaggtggtttgctgttaaggaccattactcctaagtctttccgtgaccatgt |
15814154 |
T |
|
| Q |
235 |
tcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaattaggagaa |
334 |
Q |
| |
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|| |||||| |||||||| ||||||| ||||||| ||| ||||||| |||||||||||| ||| ||||||||||| ||||||| ||||||||||||| |
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| T |
15814153 |
tccaagagaggattcattcaatggagatcttcctacaatccctttaactgtaattcaacaaagcaccgataacttttcggagtcatttaaattaggagaa |
15814054 |
T |
|
| Q |
335 |
ggtggatttggccctgtttacaaggt |
360 |
Q |
| |
|
|||||||||||||| ||||||||||| |
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|
| T |
15814053 |
ggtggatttggcccagtttacaaggt |
15814028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 24 - 384
Target Start/End: Complemental strand, 15792748 - 15792379
Alignment:
| Q |
24 |
gcagtagctctactaagttgctatggctactattactggaaaaagaaaggattaagtgaaggtaaatataacaagttacata-atgttga----gaa--t |
116 |
Q |
| |
|
||||||||||||||||| || | || |||||||| ||||| |||||| || ||| || ||||||| |||||||||||||||| ||||||| ||| | |
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| T |
15792748 |
gcagtagctctactaagctgttgtgtctactattgctggagaaagaatgggttaggtaaaggtaattataacaagttacatacatgttgaaatcgaaagt |
15792649 |
T |
|
| Q |
117 |
tctataagcccattt--cataattatctatgataaaaagtcactatttagacttactatcttccttgttaggtggtttgctgttgagaaccgttacgccc |
214 |
Q |
| |
|
||| |||| ||||| || ||||| ||||||||| | || | ||| | |||||||| |||||||| ||||||| || | ||||| ||| ||| || |
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|
| T |
15792648 |
tctctaagttcattttgcaaaattacctatgataatacgtatcaattcaaacttactagcttccttgctaggtggatttttcttgaggaccactactcct |
15792549 |
T |
|
| Q |
215 |
atgtctttccgtgatcatgttcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcag |
314 |
Q |
| |
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|| ||||||||||| |||||||| ||| || | ||| ||| |||||||| | || || |||| |||||||||||||||||| |||||||||||| |
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| T |
15792548 |
atagctttccgtgataatgttcaagaagaggaattgttgaatgcggaccttccgacgatccccttaactgtaattcaacaggccacaaataacttttcag |
15792449 |
T |
|
| Q |
315 |
agtcatctaaattaggagaaggtggatttggccctgtttacaaggtttgaatacattgtatcctgaagtc |
384 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |||||||| || | | |||||||||||||||| |
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|
| T |
15792448 |
agtcgtctaaattaggagaaggcggatttggccctgtctacaaggtatgcacaaattgtatcctgaagtc |
15792379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 174 - 367
Target Start/End: Complemental strand, 15800771 - 15800578
Alignment:
| Q |
174 |
cttccttgttaggtggtttgctgttgagaaccgttacgcccatgtctttccgtgatcatgttcaaagagatgattcattgcatggagaccttcctataat |
273 |
Q |
| |
|
|||||||| |||||||| |||||| ||| ||| |||| || || ||||||||| |||| ||||||||| | |||||||| ||||||| ||||||| ||| |
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|
| T |
15800771 |
cttccttgctaggtggtatgctgtcgaggaccattacacctatatctttccgtaatcaggttcaaagacaggattcattcaatggagaacttcctacaat |
15800672 |
T |
|
| Q |
274 |
tcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaattaggagaaggtggatttggccctgtttacaaggtttgaata |
367 |
Q |
| |
|
||||||| | ||||| |||| || ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
15800671 |
ccctttaactataattgaacaaagtaccgatgacttttcagagtcatataaattaggagaaggtggatttggcccagtttacaaggtatgaata |
15800578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 365
Target Start/End: Complemental strand, 15712722 - 15712586
Alignment:
| Q |
229 |
tcatgttcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaatta |
328 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| ||||| ||||||| |||| ||||||| ||| ||| |||||||||||||| |||||||| |
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|
| T |
15712722 |
tcatgttctaagagatgattcattgaatggagaccttccaataatccctttaattgtacttcaacaaagcactgattacttttcagagtcaactaaatta |
15712623 |
T |
|
| Q |
329 |
ggagaaggtggatttggccctgtttacaaggtttgaa |
365 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| |
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| T |
15712622 |
ggacaaggtggatttggatctgtttacaaggtttgaa |
15712586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 226 - 360
Target Start/End: Complemental strand, 15723462 - 15723328
Alignment:
| Q |
226 |
tgatcatgttcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||||| ||| ||| || | ||||| ||||| |||||| |
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|
| T |
15723462 |
tgatcatgttcaaagagatgattcattggatggagaccttccaataatccctttaacagtaattcatcagagcactaattatttttccgagtcgtctaaa |
15723363 |
T |
|
| Q |
326 |
ttaggagaaggtggatttggccctgtttacaaggt |
360 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
15723362 |
ctaggggaaggtggatttggccctgtttacaaggt |
15723328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 365
Target Start/End: Complemental strand, 15704684 - 15704545
Alignment:
| Q |
226 |
tgatcatgttcaaagagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaa |
325 |
Q |
| |
|
||||||| | || ||||| ||| ||||| ||||||||||||||| ||| ||||| | |||||||||||| || || || |||||||||| ||||| || |
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|
| T |
15704684 |
tgatcatatccacagagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaag |
15704585 |
T |
|
| Q |
326 |
ttaggagaaggtggatttggccctgtttacaaggtttgaa |
365 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
15704584 |
ttaggagaaggtggatttggtcctgtttacaaggtatgaa |
15704545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 15698290 - 15698165
Alignment:
| Q |
241 |
agatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaattaggagaaggtgga |
340 |
Q |
| |
|
||||||| ||||| ||||||||||||||| || ||||| |||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| |
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|
| T |
15698290 |
agatgatacattgaatggagaccttcctacgatccctttttctgtaattcaacatgccactaattacttttcatcatcatcaaaattaggagaaggtggc |
15698191 |
T |
|
| Q |
341 |
tttggccctgtttacaaggtttgaat |
366 |
Q |
| |
|
||||| ||||||| |||||| ||||| |
|
|
| T |
15698190 |
tttggacctgttttcaaggtatgaat |
15698165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 15693793 - 15693751
Alignment:
| Q |
303 |
ataacttttcagagtcatctaaattaggagaaggtggatttgg |
345 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
15693793 |
ataacttttcagaaacatctaaattaggggaaggtggatttgg |
15693751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 15698508 - 15698376
Alignment:
| Q |
1 |
tcatcgtagtaagtgtgcttgtcgcagtagctctactaagttgctatggctactattactggaaaaagaaaggattaagtgaaggtaaatataacaagtt |
100 |
Q |
| |
|
||||| |||||||||| || | ||||||||||| ||| |||| | || |||||| ||||||| |||||| || ||| || ||||||| ||||| ||||| |
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|
| T |
15698508 |
tcatcttagtaagtgtactaatggcagtagctctcctatgttgttgtgtctactactactggagaaagaatgggttatgtaaaggtaactataa-aagtt |
15698410 |
T |
|
| Q |
101 |
acata-atgttgagaattctataagcccatttca |
133 |
Q |
| |
|
||||| ||||| | | |||| ||||| ||||||| |
|
|
| T |
15698409 |
acatacatgtttaaagttctctaagcacatttca |
15698376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 4549781 - 4549724
Alignment:
| Q |
303 |
ataacttttcagagtcatctaaattaggagaaggtggatttggccctgtttacaaggt |
360 |
Q |
| |
|
||||||||||||| | || |||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4549781 |
ataacttttcagaattatgtaaactaggagaaggtggatttggtcctgtttacaaggt |
4549724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 3079176 - 3079233
Alignment:
| Q |
303 |
ataacttttcagagtcatctaaattaggagaaggtggatttggccctgtttacaaggt |
360 |
Q |
| |
|
||||||||||||| | | |||| ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
3079176 |
ataacttttcagaattttgtaaactaggagaaggtggatttggtcctgtatacaaggt |
3079233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 3093662 - 3093719
Alignment:
| Q |
303 |
ataacttttcagagtcatctaaattaggagaaggtggatttggccctgtttacaaggt |
360 |
Q |
| |
|
||||||||||||| | || |||| |||||| |||||| ||||| |||||||||||||| |
|
|
| T |
3093662 |
ataacttttcagaattatgtaaactaggagcaggtggttttggtcctgtttacaaggt |
3093719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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