View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14051_low_8 (Length: 433)
Name: NF14051_low_8
Description: NF14051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14051_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 37218066 - 37218435
Alignment:
| Q |
1 |
atggaaagagatgaaaaggtagagttcttgacaatttacttattgatatatggaaaacatatggaaggtgtagatgaaggattaataaggataatccttt |
100 |
Q |
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| T |
37218066 |
atggaaagagatgaaaaggtagagttcttgacaatttacttattgatatatggaaaacatatggaaggtgtagatgaaggattaatgaggataatccttt |
37218165 |
T |
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| Q |
101 |
atatacaagagctcaaatgagctgaagaagaaggtgtgagtatttgctcttatgcatgaaattttgtgagaaacaaagataatggagttttagaaatgtt |
200 |
Q |
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| T |
37218166 |
atatacaagagctcaaatgagctgaagaagaaggtgtgagtatttgctcttatgcctgaaattttgtgataaacaaagataatggagttttagaaatgtt |
37218265 |
T |
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| Q |
201 |
ggtatgagtgagtgatttgatatataaaaatatacaccaacattaataaggatgaatcgagacttttagagagaagtgcagagg-aaaaaataatgatct |
299 |
Q |
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| T |
37218266 |
ggtatgagtgagtgatttgatatataaaaatatacaccaacattaataaggatgaatcgagacttttggagagaagtgcagaggaaaaaaataatgatct |
37218365 |
T |
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| Q |
300 |
attataatttcggtaatcgggtaagcctaagaaattgtaaggttattgaataatgtagtcaccacacaag |
369 |
Q |
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| T |
37218366 |
attataatttcggtaatcgggtaagcctaagaaattgtaaggttattgaataatgtagtcaccacacaag |
37218435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 414
Target Start/End: Original strand, 37218424 - 37218454
Alignment:
| Q |
384 |
tcaccacacaagtttaaaaaggggcatagct |
414 |
Q |
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| T |
37218424 |
tcaccacacaagtttaaaaaggggcatagct |
37218454 |
T |
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