View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14052_high_4 (Length: 423)
Name: NF14052_high_4
Description: NF14052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14052_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 10724815 - 10725198
Alignment:
| Q |
20 |
agattcatgttttacatatacttgaagcaattggagtctatgaaacactgacacaaacatagatactcatatgttggcaccaacagtaatttgagaaaat |
119 |
Q |
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| T |
10724815 |
agattcatgttt-acgtatacttgaagcaattggagtctatgaaacaccgagacaaacatagatactgatatgttgacaccaatagtaatttgagaaaat |
10724913 |
T |
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| Q |
120 |
gaaagtgatttatgtaacaacgatannnnnnnactgtcatgtcggcgacagacaccaaacacacctttgatctgaaatgtcggtgctacatagattaaaa |
219 |
Q |
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| T |
10724914 |
gaaagtgatttatgtaacaacgatatttttt-agtgtcatgtcggcgacggacactgaacacacctttgatctgaaatgttggtgctacatagattaaaa |
10725012 |
T |
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| Q |
220 |
ttcattttgtaatttaaatgctcaatgactacataattaaactaaagctggattttgagagaaagatattagtcaatgcagtagtagaacttacttcagg |
319 |
Q |
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| T |
10725013 |
ttcattttgtaatttaaatgctcaatgactacataattaaactaaagctggattttgagagaaagatattagtcaaagcagtagtagcacttacttcagg |
10725112 |
T |
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| Q |
320 |
ttggtcagtttcttgtacgaggtttctcaaactccaatttgactgtttttcaaatttcttaaacagagactcttctacttctccac |
405 |
Q |
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| T |
10725113 |
ttggtcagtttcttgtacgaggtttctcaaactccaatttgactgtttttcaaatttcttaaacagagactcttctacttctccac |
10725198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 295
Target Start/End: Complemental strand, 10730573 - 10730457
Alignment:
| Q |
184 |
ctttgatctgaaa-tgtcggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactac----ataattaaactaaagctggattttgag |
278 |
Q |
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| T |
10730573 |
ctttgatctgaaagtgttggtgctatgtatattaaaatttattttgtaatttaaatgttcaatgactacgtatataataaaactaaagctggattttaat |
10730474 |
T |
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| Q |
279 |
agaaagatattagtcaa |
295 |
Q |
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| T |
10730473 |
agaaaaatattagtcaa |
10730457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 16199268 - 16199219
Alignment:
| Q |
164 |
gcgacagacaccaaacacacctttgatctgaaatgtcggtgctacataga |
213 |
Q |
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| T |
16199268 |
gcgacagacaccaaacaagcctttgatcagaaatgtcggtgctacataga |
16199219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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