View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14052_low_2 (Length: 869)
Name: NF14052_low_2
Description: NF14052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14052_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 127; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 612 - 820
Target Start/End: Complemental strand, 56158427 - 56158218
Alignment:
| Q |
612 |
atataaaaataaatagatgagaaattaattattacatggatttggaatgtgtttgatctcagggaaaacatgtatgagatagagaatggt---attggaa |
708 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| | |
|
|
| T |
56158427 |
atataaaaataaagagatgagaaataa--tattacatggatttggaatgtgtttgatttcaggaaacacatgtatgagatagagaatggtgttattggta |
56158330 |
T |
|
| Q |
709 |
gagttatcagtagcgaacaagttattgagtgtccatgaaagagcttccatgtttgtattgcttttaccaactgccacataaacacatgactcagcagctt |
808 |
Q |
| |
|
|||| | | ||| ||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56158329 |
gagtgagtaatagggaataagttagtgagtgtccatgaaagtgcttccatgcttgtattgcttttaccaactgccacataaacacatgactcagcagctt |
56158230 |
T |
|
| Q |
809 |
gttcaatttcat |
820 |
Q |
| |
|
|||||||||||| |
|
|
| T |
56158229 |
gttcaatttcat |
56158218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 343 - 592
Target Start/End: Original strand, 55827367 - 55827624
Alignment:
| Q |
343 |
aattgctattgtttttgcgcttcacttgatgcataagatatgatataattatagctaaccaatctacgaagataaggatg--------atgatacaaggg |
434 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| | | |||||||||| |
|
|
| T |
55827367 |
aattgctattgcttttgc--ttcttttgatgcataagatatacagtaattatagctaaccaatctacgaaaataaggaaggattgtggacgatacaaggg |
55827464 |
T |
|
| Q |
435 |
aagaagaggggttttaaannnnnnnagggattgtactatcgaaattaaggagatactttcattatagtgcacttgaatgtttaacgatcaaataatagtt |
534 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
55827465 |
aagaagaggggttttaaaaaattt-agggattgtgccatcgaaattaaggagatactttcaatataatgcacttgaatgattaatgatcaaataatagtt |
55827563 |
T |
|
| Q |
535 |
-ggagcatgatcaacatt--agaagttttatgactaacttgagtaacgttttaccaatcta |
592 |
Q |
| |
|
|| ||| || ||| |||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
55827564 |
gggggcagagccattattcaagaagttttatgactaacttgaataacgttttaccgatcta |
55827624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 343 - 592
Target Start/End: Original strand, 55762990 - 55763244
Alignment:
| Q |
343 |
aattgctattgtttttgcgcttcacttgatgcataagatatgatataattatagctaaccaatctacgaagataaggatg--------atgatacaaggg |
434 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||| ||||| |||||||| |||||||||||||||| ||||||| | | |||||||||| |
|
|
| T |
55762990 |
aattgctattgcttttgc--ttcttttgatgcatacgatatacagtaattatacctaaccaatctacgaaaataaggaaggattgtggacgatacaaggg |
55763087 |
T |
|
| Q |
435 |
aagaagaggggttttaaannnnnnnagggattgtactatcgaaattaaggagatactttcattatagtgcacttgaatgtttaacgatcaaataatagtt |
534 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
55763088 |
aagaagaggggttttaaaaaattt-agggattgtgccatcgaaattaaggagatactttcaatataatgcacttgaatgattaatgatcaaataatagtt |
55763186 |
T |
|
| Q |
535 |
ggagcatgatcaacattagaagttttatgactaacttgagtaacgttttaccaatcta |
592 |
Q |
| |
|
|| | || | | |||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
55763187 |
gggggcagagccattcaagaagttttatgactaacttgaataacgttttaccgatcta |
55763244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 38933046 - 38932819
Alignment:
| Q |
14 |
aagaatatggataattcatgagaacgaagaagaacatactcaaatagttagttattcaaataatgattagagat-atcacccattgata----------- |
101 |
Q |
| |
|
||||| |||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38933046 |
aagaaaatggatgatttatgagaacgaagaa---catactcaaatagttggttattcaaataatgattagagatgatcactcattgataggtgaatatga |
38932950 |
T |
|
| Q |
102 |
--------caggcatagtgtaattgcaagatctagcgttgaagttgaacaaaggggcatgacatttgtgacttgtgagattatttggttaaaacattaat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38932949 |
tccctttccaggcatagtgtaattgcaagatctagcgttgaagttgaacaaaggggcatgacattagtgacttgtgagattatttggttaaaacattaat |
38932850 |
T |
|
| Q |
194 |
taatgatgatcaagcaaacacgcattctgca |
224 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
38932849 |
taatgatgatcaagcaaacatgcattctgca |
38932819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University