View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14052_low_5 (Length: 387)
Name: NF14052_low_5
Description: NF14052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14052_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 269 - 371
Target Start/End: Complemental strand, 9919968 - 9919866
Alignment:
| Q |
269 |
aattgtttagagtgcttaccagagcttgagtgtgccgaacggttgttgttagatgaaggacttccacgttccataatgatttaggacgtaaatttgacta |
368 |
Q |
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| T |
9919968 |
aattgtttagagtgcttaccagagcttgagtgtgccgaacggttgttgttagatgaaggacttccacgttccataatgatttaggacttaaatttgatta |
9919869 |
T |
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| Q |
369 |
ttg |
371 |
Q |
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||| |
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| T |
9919868 |
ttg |
9919866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 9920146 - 9920027
Alignment:
| Q |
131 |
cagtgagatctacaatgaaattagatatcaaattcaatcttttacaaagttnnnnnnnnnnnnnnnnnnnnntatgtgttaatcactctttttaaatatc |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9920146 |
cagtgagatctacaatgaaattagatatcaaattcaatcttttacaaagttaaaaaattaaaaatattaaaatatgtgttaatcactctttttaaatatc |
9920047 |
T |
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| Q |
231 |
attactctctattattttat |
250 |
Q |
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| T |
9920046 |
attactctctattattttat |
9920027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 9909704 - 9909605
Alignment:
| Q |
271 |
ttgtttagagtgcttaccagagcttgagtgtgccgaacggttgttgttagatgaaggacttccacgttccataatgatttaggacgtaaatttgactatt |
370 |
Q |
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||||||| ||||||||||| |||||| |||| ||||| ||||||||| |||| | ||||||| | |||||| || |||||||| |||||||||||||| |
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| T |
9909704 |
ttgtttaaagtgcttaccatagcttgcttgtgttgaacg-ttgttgttaaatgaggaacttccatgctccatactgctttaggacttaaatttgactatt |
9909606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 9920264 - 9920234
Alignment:
| Q |
14 |
atatcccaagttagatctttctttccgaggc |
44 |
Q |
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| T |
9920264 |
atatcccaagttagatctttctttccgaggc |
9920234 |
T |
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