View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14052_low_6 (Length: 365)
Name: NF14052_low_6
Description: NF14052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14052_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 29023918 - 29023598
Alignment:
| Q |
17 |
ataggggtagaggtacaaggaggttcaaatatgggacaaggtggacttatgagacaacctagtatgactaaaacaaattgtctatgttcaccaacaacac |
116 |
Q |
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| T |
29023918 |
ataggggtagaggtacaagggggttcaaatatgggacaaggtggacttatgagacaacctagtatgaccaaaacaaattgtctatgttcaccaacaacac |
29023819 |
T |
|
| Q |
117 |
atcctggttcatttcgttgtaggcttcatcgtagtcctagtcttcaaaggaccaaaagcatagagccagaatcaatccctgatcagacatctagtatagg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29023818 |
atcctggttcatttcgttgtaggcttcatcgtagtcctagtcttcaaaggaccaaaagcatagagccagaatcaatccctgatcagacatctactatagg |
29023719 |
T |
|
| Q |
217 |
tcatggttctattgttggtggtgacaaagatcgaatccattaatgttatgtttaattgaatgttcaatattatttattattcagtaactatatggttact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29023718 |
tcatggttctattgttggtggtgacaaagatcgaatccattaatgttatgtttaattgaatgttcaatattatttattattcagtaactatatggttact |
29023619 |
T |
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| Q |
317 |
tttgttctgtataattgttta |
337 |
Q |
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||||||||||||||||||||| |
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| T |
29023618 |
tttgttctgtataattgttta |
29023598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 14134028 - 14133921
Alignment:
| Q |
52 |
acaaggtggacttatgagacaacctagtatgactaaaacaaattgtctatgttcaccaacaacacatcctggttcatttcgttgtaggcttcatcgtagt |
151 |
Q |
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| T |
14134028 |
acaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggtgtaggctacatcgtaca |
14133929 |
T |
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| Q |
152 |
cctagtct |
159 |
Q |
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|||||||| |
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| T |
14133928 |
cctagtct |
14133921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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