View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14052_low_7 (Length: 344)
Name: NF14052_low_7
Description: NF14052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14052_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 140 - 334
Target Start/End: Original strand, 9269548 - 9269742
Alignment:
| Q |
140 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
239 |
Q |
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| T |
9269548 |
tttaacaaatcaagtcaccgaatatgttattatttcataagctccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
9269647 |
T |
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| Q |
240 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctct |
334 |
Q |
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| T |
9269648 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctct |
9269742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9269389 - 9269516
Alignment:
| Q |
1 |
tcaatctgatacgcacaaattacttcttaattcaccctaattcttcgattctacggtctccatgattacatcaattgttttaaattagatttttccattg |
100 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9269389 |
tcaatctgatacgcacaacttacttctaaattcaccctaattcttcgattctatgctctccttgattacatcaattgttttaaattagatttttccattg |
9269488 |
T |
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| Q |
101 |
gaagaaggtagtgaatcaaggaggattt |
128 |
Q |
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| T |
9269489 |
gaagaaggtagtgaatcaaggaggattt |
9269516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 140 - 333
Target Start/End: Complemental strand, 10854473 - 10854280
Alignment:
| Q |
140 |
tttaacaaatcaactcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaattgaagaaacaa |
239 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
10854473 |
tttaacaaatcaagtcaccgataatgttattatttcataagccccaattctatccgacacaactcaattgatcgataaacacaggcaatcggagaaacaa |
10854374 |
T |
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| Q |
240 |
aataagagattcatgagatatagttatcaatatgtttgtaaatctggaatatggaatattgtatgtagttagattagtttatttacaatgtctc |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10854373 |
aataagagattcatgagatatagttatcaatatgtttgtgaatatggaatatggaatattgtatgtagttagattagtttatttgcaatgtctc |
10854280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 10854632 - 10854504
Alignment:
| Q |
1 |
tcaatctgatac-gcacaaattacttcttaattcaccctaattcttcgattctacggtctccatgattacatcaattgttttaaattagatttttccatt |
99 |
Q |
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| T |
10854632 |
tcaatctgatactgcacaacttacttctaaattcaccctaattctttgattctaccctctccttgattacatcaattgttt-aaattagatttttccatt |
10854534 |
T |
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| Q |
100 |
ggaagaaggtagtgaatcaaggaggatttt |
129 |
Q |
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| T |
10854533 |
ggaagaaggtagtgaatcaaggaggatttt |
10854504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 23733683 - 23733639
Alignment:
| Q |
250 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
294 |
Q |
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||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23733683 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23733639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 23740875 - 23740831
Alignment:
| Q |
250 |
tcatgagatatagttatcaatatgtttgtaaatctggaatatgga |
294 |
Q |
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||||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23740875 |
tcatgtgatatagttatcaataagtttgtaaatttggaatatgga |
23740831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 23617025 - 23616982
Alignment:
| Q |
251 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
294 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||| |
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| T |
23617025 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23616982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 23648366 - 23648323
Alignment:
| Q |
251 |
catgagatatagttatcaatatgtttgtaaatctggaatatgga |
294 |
Q |
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| T |
23648366 |
catgtgatatagttatcaataagtttgtaaatttggaatatgga |
23648323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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