View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14053_high_2 (Length: 280)
Name: NF14053_high_2
Description: NF14053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14053_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29024794 - 29024550
Alignment:
| Q |
1 |
taaagaagagtttccccatctatctttagtggagaaatcagtggaagttgttgatcgtgacgaagaagaagatttttctgaagaagattttgttgctcaa |
100 |
Q |
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| T |
29024794 |
taaagaagagtttccccatctatctatagtggaaaaatcagtggaagttgttgatcgtgacgaagaagaagatttttctgaagaagattttgttgctcaa |
29024695 |
T |
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| Q |
101 |
ataattgcgcaaattctacctgcttttgattatatgactgatgaaaattattttgctgaagaaccattagttgatgatgataatgatgtcgctgaagaac |
200 |
Q |
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| T |
29024694 |
ataattgtgcacgttctaccttcttttcattatatgactgatgaaaattattttgctgaagaaccattagttgatgatgataatgatgtcgctgaagaac |
29024595 |
T |
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| Q |
201 |
ttgttgttgaagaggaagacatggatgatgatagtagcaactcaa |
245 |
Q |
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| T |
29024594 |
ttgttgttgaagaggaagacatggatgatgatagtagcaactcaa |
29024550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 36067288 - 36067216
Alignment:
| Q |
173 |
gatgatgataatgatgtcgctgaagaacttgttgttgaagaggaagacatggatgatgatagtagcaactcaa |
245 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
36067288 |
gatgatgataatgatgttgctgatgaacttgttgttgaagaggataatagtgatgatgatagtagcaactcaa |
36067216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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