View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14053_low_1 (Length: 536)
Name: NF14053_low_1
Description: NF14053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14053_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 11979730 - 11980249
Alignment:
| Q |
1 |
tggttattatgccattttccatatgatttacgccaatgtttatatgcatgttctattccatgtcttatggtaaaagtttatgaatattttctgtaatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11979730 |
tggttattatgccattttccatatgatttacgccaatgtttatatgcatgttctattccatgtcttatggtaaaagtttatgaatattttctgtaatctt |
11979829 |
T |
|
| Q |
101 |
ttcatagacaataatagtcttctttgacattgatgttaacaaaacttttgtggccttttaatggcagcaggtaattctggagatttcagtttgactgagc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| |||| |
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| T |
11979830 |
ttcatagacaataatagtcttctttgactttgatgttaacaaaacttttgtggccttataatggcagccggtaattctggagatatcagtttgatggagc |
11979929 |
T |
|
| Q |
201 |
ctttgtaaactacgaagtctcgaagagataggagcatgagaaaatcatctacggtgcacttgactcaagttatgaaaccacaaatttgggaaaaatttcc |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11979930 |
ctctgtaaactacgaagtctcgaagagataggagcatgagaaaatcatctacggtgcacttgactgaagttatgaaaccacaaatttgggaaaaatttcc |
11980029 |
T |
|
| Q |
301 |
tgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgctttcgcgctgtatgtcagcaatggaataacttgataagctcacag |
400 |
Q |
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| T |
11980030 |
tgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgcttccgcgctgtatgtcagcaatggaataacttgataagctcacag |
11980129 |
T |
|
| Q |
401 |
cgtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaacttttggagattatgattatgaagccatgtatgacccttatatga |
500 |
Q |
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| T |
11980130 |
agtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaacttttggagattatgattatgaagccatgtatgacccttatatga |
11980229 |
T |
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| Q |
501 |
aaagatggtattatcctaat |
520 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11980230 |
aaagatggtattatcctaat |
11980249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 261 - 519
Target Start/End: Original strand, 11953801 - 11954059
Alignment:
| Q |
261 |
tgactcaagttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaatgttcttgcacgacttcccattgtcacaattattcgctttcg |
360 |
Q |
| |
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||||| |||||||||||||| ||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||| | || |||||| | || || |
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| T |
11953801 |
tgactgaagttatgaaaccagaaatttgggaaaagttccctgaagatctatttgaggttgtgcttgcacgacttcccatggccaaaattatatgtttccg |
11953900 |
T |
|
| Q |
361 |
cgctgtatgtcagcaatggaataacttgataagctcacagcgtttttctcagttttgtgctcaagtctcacaggaaaatccatgcttttatacaactttt |
460 |
Q |
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||||||| |||||||||||||| ||||||| ||| || ||||||||||| ||| || |||||||||| | ||||||||| |||| | | || | |
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| T |
11953901 |
tactgtatgccagcaatggaataatttgataacctctcaaagtttttctcagcaatgttctaaagtctcacaagtaaatccatggttttgcatatctcat |
11954000 |
T |
|
| Q |
461 |
ggagattatgattatgaagccatgtatgacccttatatgaaaagatggtattatcctaa |
519 |
Q |
| |
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||| |||| |||| || |||| |||||||| | |||||||||||||||| ||||||| |
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|
| T |
11954001 |
ggacattacaattacaaaaccatttatgacccatgtatgaaaagatggtataatcctaa |
11954059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 11953633 - 11953700
Alignment:
| Q |
123 |
tttgacattgatgttaacaaaacttttgtggccttttaatggcagcaggtaattctggagatttcagtttg |
193 |
Q |
| |
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|||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||| ||| |||||| |
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| T |
11953633 |
tttgacattgattttaaca---cttttgtggcctttcaatggcagcagtaaattctggaggttttagtttg |
11953700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 34751422 - 34751470
Alignment:
| Q |
270 |
ttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaa |
318 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34751422 |
ttatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaa |
34751470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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