View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14053_low_3 (Length: 389)
Name: NF14053_low_3
Description: NF14053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14053_low_3 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 3067320 - 3067691
Alignment:
| Q |
18 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
117 |
Q |
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| T |
3067320 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaacatcaaggatatatcaaatatcaatgtgccagaata |
3067419 |
T |
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| Q |
118 |
taaacaaataataatacatgcagtcttccatacaagctagaatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067420 |
taaacaaataataatacatgcagtcttccatacaagctataatacattgtacttcaataaaaggctttagatgcgtataatcgttttgatgccaataagt |
3067519 |
T |
|
| Q |
218 |
gccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcg |
317 |
Q |
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| T |
3067520 |
gccattcaaaatcttagagtagtacagatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcg |
3067619 |
T |
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| Q |
318 |
tcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcagtag |
389 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3067620 |
tcaggatccaccagtgagtaactttttcgacaccgacgtgttggcctcttattctctcccaaagtgcagtag |
3067691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 3071184 - 3071327
Alignment:
| Q |
243 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
342 |
Q |
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| T |
3071184 |
agatcctttgttttactttgttcatcttctgcacatccttgtatgaaatctggcttgcagctaccatgtggatcatcaggatcaagcagtgagtaacgtt |
3071283 |
T |
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| Q |
343 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgcag |
386 |
Q |
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| T |
3071284 |
ttggacaccgacatgttggtctcttatcatctcccaaagtgcag |
3071327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 257 - 386
Target Start/End: Complemental strand, 3055768 - 3055639
Alignment:
| Q |
257 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
356 |
Q |
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||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||| | |||| ||||| ||||| |
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| T |
3055768 |
acttagttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaagtggatcatcaggatcaaccagtgagtatcgttttggacactgacat |
3055669 |
T |
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| Q |
357 |
gttggcctcttattctctcccaaagtgcag |
386 |
Q |
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||||| ||||||| |||||||||||||| |
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| T |
3055668 |
gttggtctcttatcaactcccaaagtgcag |
3055639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 385
Target Start/End: Complemental strand, 3040773 - 3040631
Alignment:
| Q |
243 |
agatcctttgtttcacttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaacttt |
342 |
Q |
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||||||||||||| || |||||||||||||||| |||| |||| || |||||||||||||||||| | |||| ||||||||| || ||||||||||| | |
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| T |
3040773 |
agatcctttgttttacatagttcatcttctgcacatccttgtacgaaatctggcttgcagctaccataaggatagtcaggatcaactagtgagtaactat |
3040674 |
T |
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| Q |
343 |
ttcgacaccgacatgttggcctcttattctctcccaaagtgca |
385 |
Q |
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| T |
3040673 |
ctggacaccgaaatgctggtctcgtatcatctcccaaagtgca |
3040631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 369
Target Start/End: Complemental strand, 3034906 - 3034794
Alignment:
| Q |
257 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
356 |
Q |
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|||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||| ||||| |
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| T |
3034906 |
acttggttcatcttctgcacatccttgtatgaagtctggcttgcagctaccaaatggatcttcaggatcaaccagcgagtatcgttttggacactgacat |
3034807 |
T |
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| Q |
357 |
gttggcctcttat |
369 |
Q |
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| T |
3034806 |
ttcggtctcttat |
3034794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 257 - 386
Target Start/End: Original strand, 25125326 - 25125455
Alignment:
| Q |
257 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
356 |
Q |
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|||||||||||||||| || |||| || |||| |||| ||| ||| |||||| |||||| || ||||| |||||||||||||||||| ||||| ||||| |
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| T |
25125326 |
acttagttcatcttctccacatccttgcatgaagtcttgctcgcaagtaccaagtggatcatcgggatcaaccagtgagtaactttttggacactgacat |
25125425 |
T |
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| Q |
357 |
gttggcctcttattctctcccaaagtgcag |
386 |
Q |
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||||| ||||||| |||||||||||||| |
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| T |
25125426 |
gttggtctcttatcaactcccaaagtgcag |
25125455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 386
Target Start/End: Complemental strand, 3042948 - 3042819
Alignment:
| Q |
257 |
acttagttcatcttctgcatatccatgtatgaggtctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacat |
356 |
Q |
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||||||||||||||||||| |||| || |||| || ||||| ||| |||||| |||||| || | ||| |||||||||||||||||| ||||| ||||| |
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| T |
3042948 |
acttagttcatcttctgcacatccttgcatgaagtttggctcgcaagtaccaagtggatcatcggcatcaaccagtgagtaactttttggacactgacat |
3042849 |
T |
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| Q |
357 |
gttggcctcttattctctcccaaagtgcag |
386 |
Q |
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||||| | ||||| |||||||||||||| |
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| T |
3042848 |
gttggtcacttatcaactcccaaagtgcag |
3042819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3052618 - 3052679
Alignment:
| Q |
18 |
attagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaattgaa |
81 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
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| T |
3052618 |
attagagaataaataactattc--tatttatatagtcaagttgttgatatcatatgaaattgaa |
3052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 3063557 - 3063652
Alignment:
| Q |
291 |
tctggcttgcagctaccaaatggatcgtcaggatccaccagtgagtaactttttcgacaccgacatgttggcctcttattctctcccaaagtgcag |
386 |
Q |
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|||||||||||||| ||| ||||||| | |||||| | ||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||| |
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| T |
3063557 |
tctggcttgcagctgccatatggatcattaggatcaatcagtgagtactgttttggacactgacattttggtctcttatcatctcccaaagtgcag |
3063652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 6769879 - 6769824
Alignment:
| Q |
19 |
ttagagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa |
76 |
Q |
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||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
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| T |
6769879 |
ttagagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa |
6769824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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