View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14054_high_13 (Length: 269)
Name: NF14054_high_13
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3670324 - 3670072
Alignment:
| Q |
1 |
tcactgctgaaggccttataggtgtaacattacatgtattgttgttaagagaagttctgtttatgctactgcttgaaattcctcttcctagaggtacatc |
100 |
Q |
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| T |
3670324 |
tcactgctgaaggccttataggtgtaacattacatgtattgttgttaagagaagtactgtttatgctactgcttgaaattcctcttcctagaggtacatc |
3670225 |
T |
|
| Q |
101 |
atggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctctctcaacatgttttctcacagtacaaccttggattacacatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3670224 |
atggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctctctcaacatgttttctcacagtacaaccttggattacacatttg |
3670125 |
T |
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| Q |
201 |
tagtagctcctgcaaaaacaatattttgaacaagttattatcatatagggttg |
253 |
Q |
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| T |
3670124 |
tagtagctcctgcaaaaacaatattttgaacaagttattatcatatagggttg |
3670072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 26331447 - 26331535
Alignment:
| Q |
93 |
ggtacatcatggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctctctcaacatgttttctcacagtaca |
181 |
Q |
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| T |
26331447 |
ggtacatcgtggttgtgtttcccttcgtaagttgtgatcacggctttgatatcatgtgcagctctttcaacatgttttctcacattaca |
26331535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 41272522 - 41272457
Alignment:
| Q |
92 |
aggtacatcatggttatgtttcccttcatatgttgtgattactgctttaatatcatgtgctgctct |
157 |
Q |
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| T |
41272522 |
aggtacatcatgattgtgtttgccttcatatgttgtgattacagctttcggatcatgtgatgctct |
41272457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 18874967 - 18875011
Alignment:
| Q |
96 |
acatcatggttatgtttcccttcatatgttgtgattactgcttta |
140 |
Q |
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| T |
18874967 |
acatcatgattatgttttccttcatatgttgttatgactgcttta |
18875011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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