View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14054_high_14 (Length: 247)
Name: NF14054_high_14
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1716501 - 1716729
Alignment:
| Q |
1 |
gttttgaaataacctaaattaaacagtct-gagtttcggctagatgtgggaaataaggtgaatttatttgtatttgctaatgtattgaaatacagtcatt |
99 |
Q |
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| T |
1716501 |
gttttgaaataacctaaagtaaacagttaagagtttcaacttcatatggaaaataaggtgaacttatttttatctgctaatgtattgaaatagagtcgtt |
1716600 |
T |
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| Q |
100 |
ttgatgagcatggcaatcaagccaaatgggtggaagatgtcaatgatacactactagatctacatacttccattcatgaaattaccaatgactcatttct |
199 |
Q |
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| T |
1716601 |
ttgatgagcatagaactcaagtcaaacgagcgtaagatgtcaagggtacactactagatctacatattgtcattcatgaaattatcattgactcatttct |
1716700 |
T |
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| Q |
200 |
aaaagaaagctcctttta-ttatttttgt |
227 |
Q |
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| T |
1716701 |
gaaataaagctccttttatttatttttgt |
1716729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 1738009 - 1738131
Alignment:
| Q |
114 |
aatcaagccaaatgggtggaagatgtcaatgataca------ctactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaa |
207 |
Q |
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| T |
1738009 |
aatcaagccaaatgggtggaagatgtcaatggtacacttacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaa |
1738108 |
T |
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| Q |
208 |
gctcctttta-ttatttttgttt |
229 |
Q |
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| T |
1738109 |
gctccttttatttatttttgttt |
1738131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 33577656 - 33577697
Alignment:
| Q |
46 |
tgggaaataaggtgaatttatttgtatttgctaatgtattga |
87 |
Q |
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| T |
33577656 |
tgggaaataaggtgattttagttttatttgctaatgtattga |
33577697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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