View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14054_high_15 (Length: 236)
Name: NF14054_high_15
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 33247816 - 33248022
Alignment:
| Q |
23 |
taccatgaaagattagatatgagctcttaccaagaaatgaattgctctttacaacttacaaatgtgaaagaatcagtgagattgtttacaacttctaact |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
33247816 |
taccatgaaagattagatatgagctcttaccaagaaatgaattgctctttacaacttacaaatatgaaagaatcggtaagattgtttacaacttctaact |
33247915 |
T |
|
| Q |
123 |
acaatatttaacgtatttaacaaaagcgttagagcttcttatagttgatcatgcatacaacttaaactaaaattctaattcaagaaattaaagtttaaag |
222 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33247916 |
acaatatttaacgtattaaacataagtgttagagcttctcatagttgatcatgcatacaacttaaactaaaattcaaattcaagaaattaaagtttaaag |
33248015 |
T |
|
| Q |
223 |
ttcgatt |
229 |
Q |
| |
|
||||||| |
|
|
| T |
33248016 |
ttcgatt |
33248022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 20643808 - 20644016
Alignment:
| Q |
23 |
taccatgaaagattagatatgagctcttaccaagaaatgaattgctcttt--acaacttacaaatgtgaaagaatcagtgagattgtttacaacttctaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
20643808 |
taccatgaaagattagatatgagctcttaccaagaaatgaattgctctttctacgacttacaaatatgaaagaatcggtgagattgtttacaacttctaa |
20643907 |
T |
|
| Q |
121 |
ctacaatatttaacgtatttaacaaaagcgttagagcttcttatagttgatcatgcatacaacttaaactaaaattctaattcaagaaattaaagtttaa |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| | |||||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
20643908 |
ctacaatatttaacgtatttaacataagcgttagagcctctcatagttgatcatgtacacaacttaaattgaaattcaaattcaagaaattaaagtttaa |
20644007 |
T |
|
| Q |
221 |
agttcgatt |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
20644008 |
agttcgatt |
20644016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 29372747 - 29372669
Alignment:
| Q |
15 |
actgcagataccatgaaagattagatatgagctcttaccaagaaatgaattgctctt---tacaacttacaaatgtgaaaga |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |||| ||||||||| ||||||| |
|
|
| T |
29372747 |
actgcagataccatgaaagat---atatgagctcttaccaataaatgaattcctcttttctacagcttacaaatatgaaaga |
29372669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University