View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14054_low_1 (Length: 964)

Name: NF14054_low_1
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14054_low_1
NF14054_low_1
[»] chr1 (24 HSPs)
chr1 (19-542)||(47987196-47987714)
chr1 (643-864)||(47987882-47988103)
chr1 (87-433)||(49441053-49441400)
chr1 (157-369)||(49541249-49541460)
chr1 (146-407)||(48178446-48178719)
chr1 (158-403)||(41185114-41185359)
chr1 (218-401)||(45195867-45196050)
chr1 (566-643)||(47987737-47987814)
chr1 (164-437)||(49286486-49286759)
chr1 (272-403)||(40026316-40026447)
chr1 (57-377)||(40140096-40140401)
chr1 (885-947)||(47988093-47988155)
chr1 (146-355)||(2418531-2418731)
chr1 (239-369)||(33859637-33859767)
chr1 (239-369)||(33921156-33921286)
chr1 (83-202)||(33859879-33860001)
chr1 (83-202)||(33920922-33921044)
chr1 (575-639)||(49286277-49286341)
chr1 (604-643)||(33859370-33859409)
chr1 (604-643)||(33921514-33921553)
chr1 (158-191)||(45196083-45196116)
chr1 (583-631)||(49441570-49441618)
chr1 (682-766)||(49441757-49441840)
chr1 (483-536)||(49541614-49541667)
[»] chr3 (9 HSPs)
chr3 (57-383)||(14963427-14963753)
chr3 (217-358)||(563630-563771)
chr3 (217-358)||(530564-530705)
chr3 (224-358)||(486515-486649)
chr3 (231-358)||(573373-573500)
chr3 (569-643)||(14963278-14963352)
chr3 (224-327)||(38867316-38867419)
chr3 (217-327)||(541331-541441)
chr3 (217-358)||(553527-553668)
[»] chr5 (2 HSPs)
chr5 (148-436)||(31265859-31266147)
chr5 (224-346)||(1205162-1205284)
[»] chr7 (2 HSPs)
chr7 (145-356)||(32348176-32348381)
chr7 (227-351)||(25837832-25837956)
[»] chr4 (2 HSPs)
chr4 (146-358)||(55773118-55773330)
chr4 (146-358)||(55837329-55837541)
[»] chr6 (3 HSPs)
chr6 (217-409)||(3047385-3047577)
chr6 (224-389)||(34605033-34605198)
chr6 (224-389)||(34726310-34726475)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 47987196 - 47987714
Alignment:
Q  19 aactaactttcatttctaaatatgaagagtatgccgacattagcataaatgaattatcattgcacctcgccatgataaaatatccgctagaaatcgtaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47987196 aactaactttcatttctaaatatgaagagtatgccgacattagcataaatgaattatcattgtacctcgccatgataaaatatccgctagaaatcgtaac 47987295  T
Q  119 ataggcagagtgaaagacgtacttccccatcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatt 218  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  47987296 ataggcagagtggaagaagtacttccccatcttcgagcaataaactttttggttgggtatgctaataaaggaaaatgatcccttaggatgacacgaaatt 47987395  T
Q  219 tgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  47987396 tgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaaattttatgaaatgtcctccaattcttgcacacaccagcaaattgaaagtggtcga 47987495  T
Q  319 caaaatctaatgttttggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccatcttcacctgttttcctttgtatcataatattga 418  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47987496 caaaatctagtgttttggaaatgatatcaagcacatcccacggaagtttacggttctcttgtaccatcttcacctgttttcctttgtatcataatattga 47987595  T
Q  419 caatattaggtgatttctaggatattatatttgtttatatgaaacataagatacttgttaccccattttccccaaacaaaaatccatatcaacgtaaaat 518  Q
    |||||||||||||||||||||     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47987596 caatattaggtgatttctagg-----atatttgtttacatgaaacataagatacttgttaccccattttccccaaacaaaaatccatatcaacgtaaaat 47987690  T
Q  519 acaaatatgtgtgatcctcttctc 542  Q
    ||||||||||||||||||||||||    
T  47987691 acaaatatgtgtgatcctcttctc 47987714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 643 - 864
Target Start/End: Original strand, 47987882 - 47988103
Alignment:
Q  643 cctactccccaacaaagaaaaatgaaaaggtcgagtagcgaggaaaaaatattttcatgcatttcccatacagtcatgtgagaaataacaaatataccaa 742  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47987882 cctactccccgacaaagaaaaatgaaaaggtcgagtagcgaggaaaaaatattttcatgcatttcccatacagtcatgtgagaaataacaaatataccaa 47987981  T
Q  743 gaatcagtaaaagatgctagaatggaattttactcgaaaccctaaagtagtgaggnnnnnnntctccaaaacatctccatgaatagaaaggttgaaaaca 842  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||    
T  47987982 gaatcagtaaaagatgctagaatggaattttactcaaaaccctaaagtagtgtggaaaaatatctccaaaacatctccatgaatagaaaggttgaaaaca 47988081  T
Q  843 aacagataaaaccatttatgtt 864  Q
    ||||||||||||||||||||||    
T  47988082 aacagataaaaccatttatgtt 47988103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 87 - 433
Target Start/End: Original strand, 49441053 - 49441400
Alignment:
Q  87 gccatgataaaatatccgctagaaatcgtaacataggcagagtgaaagacgtacttccccatcttcgagcaataaactttttggtcgggtatgctaataa 186  Q
    ||||||||||||||||| ||| ||| ||||||||||| | || | ||||  |||| |  ||||||| |||||||||||||||| |||||||||||| |||    
T  49441053 gccatgataaaatatccactacaaaacgtaacataggtatagcggaagaaatactccatcatcttcaagcaataaactttttgttcgggtatgctactaa 49441152  T
Q  187 aggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcc-tccaat 285  Q
     ||||| |||||| | |  || | | ||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||| |||||| || ||||||    
T  49441153 gggaaattgatccgtaaccatcatatgaaatttgaagaattaatggttcttgggatgccaagaaatttctccagtaaattttacgaaaagcccctccaat 49441252  T
Q  286 tcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccat 385  Q
    ||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||  |||  ||||||||||||| |||  |    
T  49441253 tcttgcacacaccggcaaactgaaagaggtcgtcaaaatctagtgttttggaaatgatatcaagcacatcccagggaaagtcacggttctcttctacttt 49441352  T
Q  386 cttcacctgttttcctttgtatcataatattgacaatattaggtgatt 433  Q
    |||||  | ||| ||||||||||| || | ||||||| ||||||||||    
T  49441353 cttcaattttttccctttgtatcacaacaatgacaatgttaggtgatt 49441400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 157 - 369
Target Start/End: Original strand, 49541249 - 49541460
Alignment:
Q  157 aataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaagaaatttct 256  Q
    |||||| |||||||||||  |||| |||||||||| ||||| | |||  || | |||||| |||||||||||| |||||||||||||||||||||| |||    
T  49541249 aataaattttttggtcggacatgcgaataaaggaatatgattcattaccatgatacgaaacttgaagaagtaatggttcttgggatgccaagaaatctct 49541348  T
Q  257 cgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatcc 356  Q
    | | ||| |||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |    
T  49541349 ccaataaattttatgaaaagccctccaattcttacacactccatcaaattgaaagaggtcgtcaaaatctaatgttttgaaaatgatatcaaggacat-c 49541447  T
Q  357 cacagaagttcac 369  Q
    || ||||||||||    
T  49541448 caaagaagttcac 49541460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 146 - 407
Target Start/End: Complemental strand, 48178719 - 48178446
Alignment:
Q  146 catcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggat--- 242  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||     |  | ||||||||||||||||||| ||||||||||||       
T  48178719 catcttcaagcaataaactttttggttaggtatgctaataaaggaaaatgatcccccgtcacgatacgaaatttgaagaagtaatggttcttgggattcc 48178620  T
Q  243 ---------gccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttt 333  Q
             |||||||||||||||  | || |||||| ||||| ||||||||| |||| |||||| | ||||| |||| | ||||||||||||| |||||    
T  48178619 aagaaggatgccaagaaatttctccggcaaattttataaaaagccctccaatttttgctcacaccggaaaattcaaagagatcgtcaaaatctagtgttt 48178520  T
Q  334 tggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccatcttcacctgttttcctttgtat 407  Q
    |||| ||||||||||||||||||||  |||||||||  ||||||| |||| ||||||||| |||||||||||||    
T  48178519 tggatatgatatcaagcacatcccaaggaagttcaccattctcttctaccttcttcaccttttttcctttgtat 48178446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 158 - 403
Target Start/End: Complemental strand, 41185359 - 41185114
Alignment:
Q  158 ataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaagaaatttctc 257  Q
    ||||| |||||||||||||||||||||||||||| |  | | ||||  ||||  | | || ||||||||||| ||||||||||||||||| |||||||||    
T  41185359 ataaaatttttggtcgggtatgctaataaaggaataataactcttatcataaggcaatatctgaagaagtaatggttcttgggatgccaaaaaatttctc 41185260  T
Q  258 gagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatccc 357  Q
     | |||  |||||||||| ||||||||||||||||||| |||| ||| | |||  ||||||||||||||| ||||||| || || |||||| ||||||      
T  41185259 caataaaatttatgaaaaatcctccaattcttgcacacgccagaaaactaaaataggtcgtcaaaatctagtgttttgcaagtgctatcaaacacatcta 41185160  T
Q  358 acagaagttcacggttctcttgtaccatcttcacctgttttccttt 403  Q
    |  ||||||||  |||||||| |||| ||||||||| ||| |||||    
T  41185159 aaggaagttcatagttctcttctaccttcttcacctttttcccttt 41185114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 218 - 401
Target Start/End: Complemental strand, 45196050 - 45195867
Alignment:
Q  218 ttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcg 317  Q
    |||||||||||| |||||||| |||| ||| ||| ||||| | ||| |||||||||||| ||||||||||||||| ||||| | |||||||||||||||     
T  45196050 ttgaagaagtaatggttcttgagatgtcaaaaaaattctccaataaattttatgaaaagccctccaattcttgcatacaccggaaaattgaaagtggtca 45195951  T
Q  318 tcaaaatctaatgttttggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccatcttcacctgttttcct 401  Q
    ||||||||||  |||||| |||||||||||| ||||||| |   |||||||  |||||||| |||| ||||||||| |||||||    
T  45195950 tcaaaatctagagttttgaaaatgatatcaaacacatccaaagaaagttcattgttctcttctaccttcttcaccttttttcct 45195867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 566 - 643
Target Start/End: Original strand, 47987737 - 47987814
Alignment:
Q  566 ccttgtcagtagtatattttctcattattgtgatcatggatcatgccaatgtatagcaaacaatagatattcattttc 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47987737 ccttgtcagtagtatattttctcattattgtgatcatggatcatgccaatgtatagcaaacaatagatattcattttc 47987814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 164 - 437
Target Start/End: Complemental strand, 49286759 - 49286486
Alignment:
Q  164 tttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaa 263  Q
    |||||||||||||||||| |||| ||||| |||||   ||  || | | |||| |||||||| ||| |||||||| |||||||| |||||||||   | |    
T  49286759 tttttggtcgggtatgctgataatggaaagtgatcgaataacatcataagaaacttgaagaattaatggttcttgcgatgccaaaaaatttctccgatga 49286660  T
Q  264 gttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatcccacagaa 363  Q
     ||||||||||||||||||||||||| |||||||| || ||   |||   ||| |||||||||||||||| |||||||||||||||||||||     |||    
T  49286659 attttatgaaaagtcctccaattcttccacacaccggctaaccaaaaaaagtcatcaaaatctaatgtttgggaaatgatatcaagcacatcaatgggaa 49286560  T
Q  364 gttcacggttctcttgtaccatcttcacctgttttcctttgtatcataatattgacaatattaggtgatttcta 437  Q
    ||||||||||||||| |||  ||||||||| ||| |||||  |||| || | |||||| ||||||| |||||||    
T  49286559 gttcacggttctcttctacgttcttcacctttttccctttagatcacaacaatgacaacattaggtaatttcta 49286486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 272 - 403
Target Start/End: Complemental strand, 40026447 - 40026316
Alignment:
Q  272 aaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatcccacagaagttcacgg 371  Q
    ||||| ||||||||||||||||||| | ||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| |    
T  40026447 aaaagccctccaattcttgcacacaacggcaaactgaaagagatcgtcaaaatctaatgttttggaaatgatattaagcacatcccaaggaagttcacag 40026348  T
Q  372 ttctcttgtaccatcttcacctgttttccttt 403  Q
    ||||||  || | ||||||||| ||| |||||    
T  40026347 ttctctgctatcttcttcacctttttcccttt 40026316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 57 - 377
Target Start/End: Complemental strand, 40140401 - 40140096
Alignment:
Q  57 attagcataaatgaattatcattgcacctcgccatgataaaatatccgctagaaatcgtaacataggcagagtgaaagacgtacttccc-catcttcgag 155  Q
    ||||| ||||||||||||| ||   ||| ||||||||||||||||||||||||| |||||||||||  |||| | | || || | |||  ||||||| ||    
T  40140401 attagtataaatgaattattat---accccgccatgataaaatatccgctagaagtcgtaacatagatagagcggaggaagtccctccatcatcttcaag 40140305  T
Q  156 caataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaagaaatttc 255  Q
    |||||||  ||||||| ||| | |||||||||||||  |||  ||||| ||| | | |||| ||||||||     |||||||  |||||||  |||||||    
T  40140304 caataaatcttttggttggggaagctaataaaggaatttgactccttatgattatatgaaacttgaagaac----ggttcttccgatgccagtaaatttc 40140209  T
Q  256 tcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatc 355  Q
    || | |||         |||| ||||||||||||||||||||| | |||  ||||| | ||||||||||||| ||||||||||||||||||||| ||||     
T  40140208 tccaataa---------aaagccctccaattcttgcacacaccggaaaaccgaaagagatcgtcaaaatctagtgttttggaaatgatatcaagtacatt 40140118  T
Q  356 ccacagaagttcacggttctct 377  Q
    |||  ||||||||| |||||||    
T  40140117 ccaaggaagttcacagttctct 40140096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 885 - 947
Target Start/End: Original strand, 47988093 - 47988155
Alignment:
Q  885 ccatttatgttaaaatatagtctctcttctaatcttagcacacatccatacaacaataaaata 947  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47988093 ccatttatgttaaaatatagtctctcttctaatcttagcacacgtccatacaacaataaaata 47988155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 146 - 355
Target Start/End: Original strand, 2418531 - 2418731
Alignment:
Q  146 catcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgcc 245  Q
    ||||||| |||||||||  ||||||||    | ||||| ||||||| ||||| ||||| ||| | |||||| |||||||||||| |||||||| ||||||    
T  2418531 catcttcaagcaataaatcttttggtcaaacaagctaacaaaggaatatgattccttatgattatacgaaacttgaagaagtaacggttcttgcgatgcc 2418630  T
Q  246 aagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatat 345  Q
    |  ||||||||| | |||         |||  |||||||| |||||||||||| |||||  ||||| | ||||||||||||| |||||||||||||||||    
T  2418631 agtaaatttctccaataa---------aaaaccctccaatgcttgcacacaccggcaaaccgaaagagatcgtcaaaatctagtgttttggaaatgatat 2418721  T
Q  346 caagcacatc 355  Q
    ||||||||||    
T  2418722 caagcacatc 2418731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 239 - 369
Target Start/End: Complemental strand, 33859767 - 33859637
Alignment:
Q  239 ggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaa 338  Q
    |||| |||||||||||||| ||||| |||||||||||  |||||||| |||||| ||||| ||||  | |||| | |||||||||| |||||||||  ||    
T  33859767 ggattccaagaaatttctccagtaaattttatgaaaaaccctccaatccttgcatacaccggcaatctaaaagagatcgtcaaaatttaatgttttaaaa 33859668  T
Q  339 atgatatcaagcacatcccacagaagttcac 369  Q
    |||||||||||||||||| |  |||||||||    
T  33859667 atgatatcaagcacatccgaaggaagttcac 33859637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 239 - 369
Target Start/End: Original strand, 33921156 - 33921286
Alignment:
Q  239 ggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaa 338  Q
    |||| |||||||||||||| ||||| |||||||||||  |||||||| |||||| ||||| ||||  | |||| | |||||||||| |||||||||  ||    
T  33921156 ggattccaagaaatttctccagtaaattttatgaaaaaccctccaatccttgcatacaccggcaatctaaaagagatcgtcaaaatttaatgttttaaaa 33921255  T
Q  339 atgatatcaagcacatcccacagaagttcac 369  Q
    |||||||||||||||||| |  |||||||||    
T  33921256 atgatatcaagcacatccgaaggaagttcac 33921286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 33860001 - 33859879
Alignment:
Q  83 cctcgccatgataaaatatccgctagaaatcgtaacataggcagagtga---aagacgtacttccccatcttcgagcaataaactttttggtcgggtatg 179  Q
    |||| ||||||||||||||||||||||||  |||||||||  | ||||    |||| ||| | |  ||||||| ||||||||| |||||||| || ||||    
T  33860001 cctcaccatgataaaatatccgctagaaaatgtaacatagatatagtggttgaagaagtattccatcatcttcaagcaataaattttttggttggatatg 33859902  T
Q  180 ctaataaaggaaaatgatccctt 202  Q
    |||||||||||| ||||||||||    
T  33859901 ctaataaaggaacatgatccctt 33859879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 33920922 - 33921044
Alignment:
Q  83 cctcgccatgataaaatatccgctagaaatcgtaacataggcagagtga---aagacgtacttccccatcttcgagcaataaactttttggtcgggtatg 179  Q
    |||| ||||||||||||||||||||||||  |||||||||  | ||||    |||| ||| | |  ||||||| ||||||||| |||||||| || ||||    
T  33920922 cctcaccatgataaaatatccgctagaaaatgtaacatagatatagtggttgaagaagtattccatcatcttcaagcaataaattttttggttggatatg 33921021  T
Q  180 ctaataaaggaaaatgatccctt 202  Q
    |||||||||||| ||||||||||    
T  33921022 ctaataaaggaacatgatccctt 33921044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 49286341 - 49286277
Alignment:
Q  575 tagtatattttctcattattgtgatcatggatcatgccaatgtatagcaaacaatagatattcat 639  Q
    |||| ||||||| |||| | | ||||||||||||||||||||||||||||||||||| |||||||    
T  49286341 tagtttattttcccattttcgggatcatggatcatgccaatgtatagcaaacaataggtattcat 49286277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 604 - 643
Target Start/End: Complemental strand, 33859409 - 33859370
Alignment:
Q  604 gatcatgccaatgtatagcaaacaatagatattcattttc 643  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33859409 gatcatgccaatgtatagcaaacattagatattcattttc 33859370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 604 - 643
Target Start/End: Original strand, 33921514 - 33921553
Alignment:
Q  604 gatcatgccaatgtatagcaaacaatagatattcattttc 643  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33921514 gatcatgccaatgtatagcaaacattagatattcattttc 33921553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 45196116 - 45196083
Alignment:
Q  158 ataaactttttggtcgggtatgctaataaaggaa 191  Q
    ||||||||||||||||||||||||||||||||||    
T  45196116 ataaactttttggtcgggtatgctaataaaggaa 45196083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 583 - 631
Target Start/End: Original strand, 49441570 - 49441618
Alignment:
Q  583 tttctcattattgtgatcatggatcatgccaatgtatagcaaacaatag 631  Q
    |||| |||| ||||||||||||||||||||||| |||||||||| ||||    
T  49441570 tttcccatttttgtgatcatggatcatgccaatatatagcaaactatag 49441618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 682 - 766
Target Start/End: Original strand, 49441757 - 49441840
Alignment:
Q  682 gaggaaaaaatattttcatgcatttcccatacagtcatgtgagaaataacaaatataccaagaatcagtaaaagatgctagaatg 766  Q
    ||||||| || |||| |||||| ||||| |||| |||||||||| | |||||||| ||||||||||| |||||||| | ||||||    
T  49441757 gaggaaataacatttccatgcaattccc-tacaatcatgtgagataaaacaaatacaccaagaatcaataaaagatacaagaatg 49441840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 49541614 - 49541667
Alignment:
Q  483 attttccccaaacaaaaatccatatcaacgtaaaatacaaatatgtgtgatcct 536  Q
    ||||||| ||||||| |||||| | |||| |||||||||||||||||| |||||    
T  49541614 attttcctcaaacaacaatccagaccaacataaaatacaaatatgtgttatcct 49541667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 3e-72; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 57 - 383
Target Start/End: Complemental strand, 14963753 - 14963427
Alignment:
Q  57 attagcataaatgaattatcattgcacctcgccatgataaaatatccgctagaaatcgtaacataggcagagtgaaagacgtacttccccatcttcgagc 156  Q
    |||||||||||||||||| ||| | ||| | |||||||||||||||||||||||| ||||||||||| |||  |   || |||||||  ||||||| ||     
T  14963753 attagcataaatgaattaacatagtaccccaccatgataaaatatccgctagaaaacgtaacataggtagatggtgggaagtacttcatcatcttcaagt 14963654  T
Q  157 aataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaagaaatttct 256  Q
     || |||||||||||| |||| ||||||||||||| ||||| ||  |  || | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  14963653 gatgaactttttggtctggtacgctaataaaggaatatgattcccaatcatgatacgaaatttgaagaagtaatggttcttgggatgccaagaaatttct 14963554  T
Q  257 cgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatcaagcacatcc 356  Q
    | || |  ||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  14963553 ccagcagctttcatgaaaagtcctccaattcttgcacacatcggcaaactgaaagtggtcgtcaaaatctaaggttttgaaaataatatcaagcacatcc 14963454  T
Q  357 cacagaagttcacggttctcttgtacc 383  Q
     |  ||||||||  |||||||| ||||    
T  14963453 gaaggaagttcattgttctcttctacc 14963427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 217 - 358
Target Start/End: Original strand, 563630 - 563771
Alignment:
Q  217 tttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtc 316  Q
    |||||| |||||| |||||||  |||||||||||||||||| | ||| ||||||||||   ||||||||||||||||||||||||||||| |||| ||||    
T  563630 tttgaacaagtaatggttcttcagatgccaagaaatttctcaaataaattttatgaaattccctccaattcttgcacacaccagcaaattcaaagaggtc 563729  T
Q  317 gtcaaaatctaatgttttggaaatgatatcaagcacatccca 358  Q
    ||||||||||| | || | |||||||||||||||| ||||||    
T  563730 gtcaaaatctagttttctagaaatgatatcaagcaaatccca 563771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 217 - 358
Target Start/End: Original strand, 530564 - 530705
Alignment:
Q  217 tttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtc 316  Q
    |||||| |||||| |||||||  |||||||||||||||||| | |||  |||||||||   ||||||||||||||||||||||||||||| |||| ||||    
T  530564 tttgaacaagtaatggttcttcagatgccaagaaatttctccaataaaatttatgaaattccctccaattcttgcacacaccagcaaattcaaagaggtc 530663  T
Q  317 gtcaaaatctaatgttttggaaatgatatcaagcacatccca 358  Q
    ||||||||| | | || | ||||| |||||||||| ||||||    
T  530664 gtcaaaatcaagttttctagaaatcatatcaagcaaatccca 530705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 224 - 358
Target Start/End: Original strand, 486515 - 486649
Alignment:
Q  224 aagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaa 323  Q
    |||||| |||||||||||||||||||| ||| || ||||||||||||||||   |||||||||||||||||| |||| |||||||||| |||| || |||    
T  486515 aagtaatggttcttgggatgccaagaactttttccagtaagttttatgaaactccctccaattcttgcacacgccagaaaattgaaagaggtcatcgaaa 486614  T
Q  324 tctaatgttttggaaatgatatcaagcacatccca 358  Q
    ||||    | ||||||||| |||||||| ||||||    
T  486615 tctagatctctggaaatgacatcaagcatatccca 486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 573373 - 573500
Alignment:
Q  231 ggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatg 330  Q
    ||||||||| |||||||||| ||| || | ||||||||||||||   |||||||||||||||||||||||| ||||||||| |||| || |||||||       
T  573373 ggttcttggaatgccaagaactttttccaataagttttatgaaattccctccaattcttgcacacaccagcgaattgaaagaggtcatcgaaatctagat 573472  T
Q  331 ttttggaaatgatatcaagcacatccca 358  Q
     | ||||||||| |||||||| ||||||    
T  573473 ctctggaaatgacatcaagcatatccca 573500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 14963352 - 14963278
Alignment:
Q  569 tgtcagtagtatattttctcattattgtgatcatggatcatgccaatgtatagcaaacaatagatattcattttc 643  Q
    ||||||| || |||||||||||| | |||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  14963352 tgtcagtggtttattttctcattttggtgatcatagattatgccaatgtatagcaaacaataaatattcattttc 14963278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 38867316 - 38867419
Alignment:
Q  224 aagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaa 323  Q
    |||||| ||||||||| |||||| |||||| ||| | ||| |||||||||| | || ||||||||||||||||| | ||||||| ||| | |||||||||    
T  38867316 aagtaatggttcttggaatgccatgaaattcctccaataaattttatgaaatgcccgccaattcttgcacacactaccaaattggaagagatcgtcaaaa 38867415  T
Q  324 tcta 327  Q
    ||||    
T  38867416 tcta 38867419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 541331 - 541441
Alignment:
Q  217 tttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtc 316  Q
    |||||| |||||| |||||| | |||||||| || ||| || | |||||||| |||||   |||||||||||||||||||||||| ||||||||| ||||    
T  541331 tttgaataagtaatggttctggtgatgccaaaaactttttccaataagttttttgaaattccctccaattcttgcacacaccagcgaattgaaagaggtc 541430  T
Q  317 gtcaaaatcta 327  Q
     || |||||||    
T  541431 atcgaaatcta 541441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 358
Target Start/End: Original strand, 553527 - 553668
Alignment:
Q  217 tttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtc 316  Q
    |||||| |||||| ||||| |||  ||||||||| ||| || | ||| ||||||||||   |||||||||||||||||| ||||| ||||||||| ||||    
T  553527 tttgaataagtaatggttcctggagtgccaagaactttttccaataaattttatgaaattccctccaattcttgcacaccccagcgaattgaaagaggtc 553626  T
Q  317 gtcaaaatctaatgttttggaaatgatatcaagcacatccca 358  Q
     || |||||||    | ||||||||| |||||||| ||||||    
T  553627 atcgaaatctagatctctggaaatgacatcaagcatatccca 553668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 148 - 436
Target Start/End: Complemental strand, 31266147 - 31265859
Alignment:
Q  148 tcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgccaa 247  Q
    ||||| ||||||||||||||||||  |||||| ||||||| ||| ||||| || || ||| | | ||||||||||||||||| |||||||||||||||||    
T  31266147 tcttctagcaataaactttttggttaggtatgataataaaagaatatgatgccctacgattataagaaatttgaagaagtaatggttcttgggatgccaa 31266048  T
Q  248 gaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatatca 347  Q
    |||||||||| | ||| |||||||||||| |||||||||||||||||||||  |||| |||||||||||||||||||||| |||||| ||||| ||||||    
T  31266047 gaaatttctccaataatttttatgaaaagccctccaattcttgcacacaccgccaaactgaaagtggtcgtcaaaatctagtgttttagaaattatatca 31265948  T
Q  348 agcacatcccaca-gaagttcacggttctcttgtaccatcttcacctgttttcctttgtatcataatattgacaatattaggtgatttct 436  Q
    ||||||| ||||| |||||| |  ||| |||| |||| ||||| ||| ||  ||||||||||| || | ||| ||||||  |||||||||    
T  31265947 agcacat-ccacaggaagttgatagttatcttttaccttcttcgccttttcccctttgtatcacaacaatgaaaatattcagtgatttct 31265859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 1205162 - 1205284
Alignment:
Q  224 aagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaa 323  Q
    |||||| | |||||| ||||||| |||||||||| | ||| ||||||||||   || ||||||||||||||||  | ||||||||||| |||| ||||||    
T  1205162 aagtaatgattcttgagatgccatgaaatttctccaataaattttatgaaattgccaccaattcttgcacacattaccaaattgaaagaggtcatcaaaa 1205261  T
Q  324 tctaatgttttggaaatgatatc 346  Q
    | ||   |||| |||||||||||    
T  1205262 tttagcattttagaaatgatatc 1205284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 145 - 356
Target Start/End: Original strand, 32348176 - 32348381
Alignment:
Q  145 ccatcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacga--aatttgaagaagtaaaggttcttgggat 242  Q
    |||||||| |||||||||||||||||||| ||||| | ||||||||| |||||        ||| |||||  ||||||||||||||| |||||||||||     
T  32348176 ccatcttcaagcaataaactttttggtcgagtatgtttataaaggaatatgat--------ataccacgatgaatttgaagaagtaatggttcttgggac 32348267  T
Q  243 gccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatga 342  Q
    | ||||||||||||| | ||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || ||||||| ||||| ||||||||    
T  32348268 gtcaagaaatttctccaataaattttatgaaaagccctccaattcttgcacacaccggcaaactgaaagtggtcatcgaaatctagtgtttcggaaatga 32348367  T
Q  343 tatcaagcacatcc 356  Q
    ||||||||||||||    
T  32348368 tatcaagcacatcc 32348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 351
Target Start/End: Original strand, 25837832 - 25837956
Alignment:
Q  227 taaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatct 326  Q
    ||||||| ||||||||||||  |||||| |  ||||| ||||||||||   ||||||  ||||||| || ||||||||||||||| | || || ||||||    
T  25837832 taaaggtgcttgggatgccagaaaatttatgcagtaaattttatgaaattccctccagctcttgcatacgccagcaaattgaaagagatcatcgaaatct 25837931  T
Q  327 aatgttttggaaatgatatcaagca 351  Q
    |   | |||||||||||||| ||||    
T  25837932 agattcttggaaatgatatctagca 25837956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 55773330 - 55773118
Alignment:
Q  146 catcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgcc 245  Q
    |||||| |||| ||||||||||||||  |||||||| ||||||||||| |||  |||   | |  | ||  |||||| |||||| ||||||||  |||||    
T  55773330 catctttgagcgataaactttttggttaggtatgctgataaaggaaaaagatttcttgaaaaaggaagacttttgaacaagtaatggttcttgtaatgcc 55773231  T
Q  246 aagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatat 345  Q
    |||||||||||| | ||  |||||||||| | |||||||||||| ||||||| ||||||||||||| | || ||||| ||||  | ||||||||||||||    
T  55773230 aagaaatttctccaatacattttatgaaatgccctccaattcttacacacacaagcaaattgaaagagatcatcaaagtctagagatttggaaatgatat 55773131  T
Q  346 caagcacatccca 358  Q
    |||| ||||||||    
T  55773130 caagaacatccca 55773118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 146 - 358
Target Start/End: Complemental strand, 55837541 - 55837329
Alignment:
Q  146 catcttcgagcaataaactttttggtcgggtatgctaataaaggaaaatgatcccttaggataacacgaaatttgaagaagtaaaggttcttgggatgcc 245  Q
    |||||| |||| ||||||||||||||  |||||||| ||||||||||| |||  |||   | |  | ||  |||||| |||||| ||||||||  |||||    
T  55837541 catctttgagcgataaactttttggttaggtatgctgataaaggaaaaagatttcttgaaaaaggaagacttttgaacaagtaatggttcttgtaatgcc 55837442  T
Q  246 aagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaatctaatgttttggaaatgatat 345  Q
    |||||||||||| | ||  |||||||||| | |||||||||||| ||||||| ||||||||||||| | || ||||| ||||  | ||||||||||||||    
T  55837441 aagaaatttctccaatacattttatgaaatgccctccaattcttacacacacaagcaaattgaaagagatcatcaaagtctagagatttggaaatgatat 55837342  T
Q  346 caagcacatccca 358  Q
    |||| ||||||||    
T  55837341 caagaacatccca 55837329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 217 - 409
Target Start/End: Complemental strand, 3047577 - 3047385
Alignment:
Q  217 tttgaagaagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtc 316  Q
    |||| |||||||| ||||||||||||||||   |||| ||| | ||| ||||||||||  ||| |||||| |||||||| | | ||||||||||| ||||    
T  3047577 tttggagaagtaatggttcttgggatgccatataattcctccaataaattttatgaaatttccgccaattgttgcacacgctaccaaattgaaagaggtc 3047478  T
Q  317 gtcaaaatctaatgttttggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccatcttcacctgttttcctttgtatca 409  Q
     |||||||||||   | |  ||||||  ||||||| ||||||  |||||| || |||||||  |||| ||||||  | ||| |||||||||||    
T  3047477 atcaaaatctaacaatctcaaaatgacttcaagcaaatcccaaggaagttgacagttctctactaccttcttcatttttttccctttgtatca 3047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 389
Target Start/End: Complemental strand, 34605198 - 34605033
Alignment:
Q  224 aagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaa 323  Q
    |||||| ||||||| |||||||| |||||| ||| | ||| ||||||||||    | |||||| ||||| |||| | ||||||||||| |||| ||||||    
T  34605198 aagtaatggttcttcggatgccatgaaattcctccaataaattttatgaaattctcgccaatttttgcatacactaccaaattgaaagaggtcatcaaaa 34605099  T
Q  324 tctaatgttttggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccatcttc 389  Q
    ||||   |  |  ||||||| ||||||| ||||||  |||||| || |||||||| |||| |||||    
T  34605098 tctagattcctcaaaatgatgtcaagcaaatcccaaggaagttgacagttctcttctaccttcttc 34605033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 389
Target Start/End: Complemental strand, 34726475 - 34726310
Alignment:
Q  224 aagtaaaggttcttgggatgccaagaaatttctcgagtaagttttatgaaaagtcctccaattcttgcacacaccagcaaattgaaagtggtcgtcaaaa 323  Q
    |||||| ||||||| |||||||| |||||| ||| | ||| ||||||||||    | |||||| ||||| |||| | ||||||||||| |||| ||||||    
T  34726475 aagtaatggttcttcggatgccatgaaattcctccaataaattttatgaaattctcgccaatttttgcatacactaccaaattgaaagaggtcatcaaaa 34726376  T
Q  324 tctaatgttttggaaatgatatcaagcacatcccacagaagttcacggttctcttgtaccatcttc 389  Q
    ||||   |  |  ||||||| ||||||| ||||||  |||||| || |||||||| |||| |||||    
T  34726375 tctagattcctcaaaatgatgtcaagcaaatcccaaggaagttgacagttctcttctaccttcttc 34726310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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