View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14054_low_12 (Length: 282)
Name: NF14054_low_12
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 37 - 266
Target Start/End: Complemental strand, 2223882 - 2223671
Alignment:
| Q |
37 |
atgcatgtatatcattattttattataagtacgtacgtacctattgatctggaagttgcgagtactcctaaaacacgattcccattccaatcaatcactc |
136 |
Q |
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| T |
2223882 |
atgcatgtatatcatt---ttattataagtacgtac----ctattgatctggaagttgcgagtactcctaaaacacgattcccattccaatcaatcactc |
2223790 |
T |
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| Q |
137 |
ttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataattcagccaaaacaaagtgtttgatat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
2223789 |
ttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcgatcatcattaaataataataatt-----------aattgttggatat |
2223701 |
T |
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| Q |
237 |
ggtaccaaaagcagttcaaataccataaat |
266 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2223700 |
ggtaccaaaagcagttcaaataccataaat |
2223671 |
T |
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