View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14054_low_13 (Length: 269)
Name: NF14054_low_13
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 19398412 - 19398175
Alignment:
| Q |
21 |
acccggactttaaatttggctaatacaatgatataaatataaattttaaattgatatgattgtactagactataagcaacctctaatttaatgacatgat |
120 |
Q |
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| T |
19398412 |
acccggactttaaatttggctaatacaatgatataaatataaattttaaattgatatgattgtactagactataagcaacctctaatttaatgacatgat |
19398313 |
T |
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| Q |
121 |
atttgtagttatgtattgcaaacaaatggtactttgacgtaaatgatcaatttgtttctacatttcaatgctatctaatatctatcattttgtttctaac |
220 |
Q |
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| T |
19398312 |
atttgtagttatgtattgcaaacaaatggtactttgacgtaaatgatcaatttgtttctacatttcaatgctatctaatatctatcattttgtttctaac |
19398213 |
T |
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| Q |
221 |
attgctatttatgtaatgcctatagtctcttcatctca |
258 |
Q |
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| T |
19398212 |
attgctatttatgtaatgcctatagtctcttcatctca |
19398175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 19374106 - 19373950
Alignment:
| Q |
107 |
tttaatgacatgatatttgtagttatgtattgcaaacaaatggtactttgac----gtaaatgatcaatttgtttctacatttcaatgctatctaatatc |
202 |
Q |
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| T |
19374106 |
tttaaagacatgatatttgtagttctgtattgcaaacaaatggtacattgactgccgtaaatgatcaatttgtttctacatttcaatgctatctaatatc |
19374007 |
T |
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| Q |
203 |
tatcattttg-tttctaacattgctatttatgtaatgcctatagtctcttcatctca |
258 |
Q |
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| T |
19374006 |
tatcaatttgttttctaacattgctatttatgtaatgcctatagtttctacatctca |
19373950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 19332521 - 19332374
Alignment:
| Q |
115 |
catgatatttgtagttatgtattgcaaacaaatggtactttgac----gtaaatgatcaatttgtttctacatttcaatgctatctaatatctatcattt |
210 |
Q |
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| T |
19332521 |
catgatatttgcagttttgtattgccaacaaatggtacattgactgccgtaaatgatcaatttatttctacatttcaatgctatctaatatctatcaatt |
19332422 |
T |
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| Q |
211 |
tgtttctaacattgctatttatgtaatgcctatagtctcttcatctca |
258 |
Q |
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| T |
19332421 |
tgtttctaacattgctatttatgtaatgccaatagtttctacatctca |
19332374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 19374235 - 19374185
Alignment:
| Q |
57 |
atataaattttaaattgatatgattgtactagactataagcaacctctaat |
107 |
Q |
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| T |
19374235 |
atataaattttaagtgaatatgattgttctagactataagcaacctctaat |
19374185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 19373963 - 19373925
Alignment:
| Q |
174 |
gtttctacatttcaatgctatctaatatctatcattttg |
212 |
Q |
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| T |
19373963 |
gtttctacatctcaatgctatctaatatctatcaatttg |
19373925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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