View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14054_low_18 (Length: 226)

Name: NF14054_low_18
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14054_low_18
NF14054_low_18
[»] chr5 (13 HSPs)
chr5 (115-226)||(10562765-10562876)
chr5 (115-218)||(10719266-10719369)
chr5 (126-218)||(10743070-10743162)
chr5 (115-218)||(10765483-10765586)
chr5 (126-212)||(10749389-10749475)
chr5 (151-212)||(9838702-9838763)
chr5 (127-216)||(10609463-10609549)
chr5 (12-48)||(10743240-10743276)
chr5 (151-198)||(11050260-11050307)
chr5 (12-48)||(10745010-10745046)
chr5 (156-218)||(10578786-10578848)
chr5 (152-200)||(10548578-10548626)
chr5 (12-48)||(10757667-10757703)
[»] chr6 (6 HSPs)
chr6 (128-226)||(12897316-12897414)
chr6 (128-226)||(12946392-12946490)
chr6 (141-226)||(12904950-12905035)
chr6 (128-226)||(12955551-12955649)
chr6 (128-226)||(12955829-12955927)
chr6 (128-222)||(12930027-12930121)
[»] chr2 (1 HSPs)
chr2 (128-226)||(17925766-17925864)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 10562765 - 10562876
Alignment:
Q  115 atgtggtttaccacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10562765 atgtggtttaccacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcaatatccagtgatc 10562864  T
Q  215 catacaatgctc 226  Q
    ||||||||||||    
T  10562865 catacaatgctc 10562876  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 10719369 - 10719266
Alignment:
Q  115 atgtggtttaccacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatc 214  Q
    |||||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |||||||||    
T  10719369 atgtggtttggcacaaacaaaattgtggcagtggctgcattaggtaaccaaacagatcatttagcattgctcaaattcaaagaatgaataaccagtgatc 10719270  T
Q  215 cata 218  Q
    ||||    
T  10719269 cata 10719266  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 10743162 - 10743070
Alignment:
Q  126 cacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccata 218  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  10743162 cacaaacaaaatggtggcagtggctcaattaggaaaccaatcagatcatttggcattgctcaaattcaaagaatcaatatcaagtgatccata 10743070  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 10765586 - 10765483
Alignment:
Q  115 atgtggtttaccacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatc 214  Q
    |||||||||  |||||||||||||||||||||||||  ||||||||||||| ||||||| || |||||||||||||||||||||||| |||| |||||||    
T  10765586 atgtggtttggcacaaacaaaatggtggcagtggctcaattaggaaaccaatcagatcaattggcattgctcaaattcaaagaatcaatatcaagtgatc 10765487  T
Q  215 cata 218  Q
    ||||    
T  10765486 cata 10765483  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 10749475 - 10749389
Alignment:
Q  126 cacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtga 212  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||| |||||    
T  10749475 cacaaacaaaaccgtggcagtggctgcattaggaaaccaaacagatcatttggcattgcacaaatttaaagaatcaatatcgagtga 10749389  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 9838763 - 9838702
Alignment:
Q  151 gcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtga 212  Q
    ||||||||||||||||| |||||| | ||||||||| |||||||||||||| ||||||||||    
T  9838763 gcattaggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtga 9838702  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 10609463 - 10609549
Alignment:
Q  127 acaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatcca 216  Q
    ||||||||||  |||||||||||   ||||||||||||||| ||| ||||  ||||||| ||||||||||||||| |||||| |||||||    
T  10609463 acaaacaaaactgtggcagtggc---attaggaaaccaaactgattatttgtcattgcttaaattcaaagaatcaatatccaatgatcca 10609549  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 10743276 - 10743240
Alignment:
Q  12 cataaaccacacacactttcttgtaaaccaaatgaag 48  Q
    |||||||||||||||||||||||||||||||||||||    
T  10743276 cataaaccacacacactttcttgtaaaccaaatgaag 10743240  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 11050307 - 11050260
Alignment:
Q  151 gcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaa 198  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||||    
T  11050307 gcattaggaaaccaaacagatcattttgcattgattaaattcaaagaa 11050260  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 10745046 - 10745010
Alignment:
Q  12 cataaaccacacacactttcttgtaaaccaaatgaag 48  Q
    ||||||| |||||||||||||||||||||||||||||    
T  10745046 cataaactacacacactttcttgtaaaccaaatgaag 10745010  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 10578786 - 10578848
Alignment:
Q  156 aggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccata 218  Q
    |||||||||||| |||||||| || |||||| |||||||  ||||| |||| |||||||||||    
T  10578786 aggaaaccaaaccgatcatttcgctttgctccaattcaagcaatcaatatctagtgatccata 10578848  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 10548578 - 10548626
Alignment:
Q  152 cattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatc 200  Q
    |||||||||||||||| |||||| || ||||||| |||||||| |||||    
T  10548578 cattaggaaaccaaactgatcatctatcattgcttaaattcaaggaatc 10548626  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 10757703 - 10757667
Alignment:
Q  12 cataaaccacacacactttcttgtaaaccaaatgaag 48  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  10757703 cataaaccatacacactttcttctaaaccaaatgaag 10757667  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 12897316 - 12897414
Alignment:
Q  128 caaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaatgctc 226  Q
    ||||||||||   |||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||    
T  12897316 caaacaaaattagggcattggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaatgctc 12897414  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 12946392 - 12946490
Alignment:
Q  128 caaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaatgctc 226  Q
    ||||||||||   ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| |||||||| ||||    
T  12946392 caaacaaaataagggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaaagctc 12946490  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 12904950 - 12905035
Alignment:
Q  141 ggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaatgctc 226  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| || | ||||| |||||||||||||    
T  12904950 ggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatgctc 12905035  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 12955551 - 12955649
Alignment:
Q  128 caaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaatgctc 226  Q
    ||||||||||   ||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||| |||||||||||||    
T  12955551 caaacaaaattacggcagtgactgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttctagtgacccatacaatgctc 12955649  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 12955829 - 12955927
Alignment:
Q  128 caaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaatgctc 226  Q
    ||||||||||   |||| || ||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||| |||||||||||||    
T  12955829 caaacaaaattaaggcaatgactgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttcaagtgacccatacaatgctc 12955927  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 12930027 - 12930121
Alignment:
Q  128 caaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaat 222  Q
    ||||||||||   ||||||||||||| ||||||| ||||| |||||| | |||||||||||||||||||||||| || | ||||| |||||||||    
T  12930027 caaacaaaattagggcagtggctgcaataggaaagcaaactgatcatctggcattgctcaaattcaaagaatcaataactagtgacccatacaat 12930121  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 17925864 - 17925766
Alignment:
Q  128 caaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcagtatccagtgatccatacaatgctc 226  Q
    ||||||||||   ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||| |||||||| ||||    
T  17925864 caaacaaaattagggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttctagtgacccatacaaagctc 17925766  T

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