View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14054_low_2 (Length: 802)

Name: NF14054_low_2
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14054_low_2
NF14054_low_2
[»] chr1 (10 HSPs)
chr1 (59-721)||(48537883-48538556)
chr1 (139-256)||(2089605-2089724)
chr1 (363-443)||(25155093-25155173)
chr1 (363-462)||(48125912-48126010)
chr1 (363-497)||(14890906-14891041)
chr1 (363-497)||(42729154-42729290)
chr1 (363-497)||(8880193-8880327)
chr1 (364-462)||(18044411-18044511)
chr1 (363-497)||(14902884-14903019)
chr1 (363-481)||(41477178-41477297)
[»] chr8 (5 HSPs)
chr8 (139-256)||(16820824-16820943)
chr8 (363-441)||(8545617-8545696)
chr8 (397-566)||(36274819-36274990)
chr8 (372-462)||(39379825-39379915)
chr8 (397-443)||(35747461-35747507)
[»] chr7 (13 HSPs)
chr7 (139-256)||(16678798-16678917)
chr7 (139-256)||(17653034-17653153)
chr7 (364-563)||(37217752-37217953)
chr7 (364-443)||(23475530-23475609)
chr7 (363-462)||(31345273-31345372)
chr7 (364-462)||(3773817-3773915)
chr7 (397-458)||(35305663-35305724)
chr7 (363-431)||(3156835-3156903)
chr7 (398-443)||(19440277-19440322)
chr7 (397-461)||(30999768-30999832)
chr7 (397-462)||(11472958-11473023)
chr7 (398-443)||(23533871-23533916)
chr7 (397-462)||(40335878-40335943)
[»] chr3 (6 HSPs)
chr3 (363-526)||(40890109-40890271)
chr3 (89-183)||(46868930-46869023)
chr3 (139-180)||(25484074-25484115)
chr3 (213-256)||(25484446-25484489)
chr3 (397-462)||(38347388-38347453)
chr3 (363-493)||(26207029-26207161)
[»] chr4 (17 HSPs)
chr4 (363-600)||(33616220-33616462)
chr4 (139-256)||(2443119-2443238)
chr4 (363-495)||(42907635-42907769)
chr4 (363-497)||(12075842-12075978)
chr4 (363-562)||(25265292-25265493)
chr4 (363-497)||(7334394-7334532)
chr4 (368-493)||(37926314-37926441)
chr4 (397-497)||(3505049-3505150)
chr4 (365-440)||(39085903-39085978)
chr4 (364-422)||(8844075-8844133)
chr4 (364-422)||(8857039-8857097)
chr4 (364-442)||(9929436-9929514)
chr4 (364-418)||(53906966-53907020)
chr4 (397-458)||(3513974-3514035)
chr4 (397-462)||(12505769-12505834)
chr4 (363-497)||(25299043-25299179)
chr4 (403-497)||(43351580-43351676)
[»] chr5 (7 HSPs)
chr5 (139-250)||(20464365-20464478)
chr5 (363-497)||(29664714-29664849)
chr5 (366-600)||(35583862-35584100)
chr5 (363-462)||(38972664-38972763)
chr5 (365-496)||(16311486-16311619)
chr5 (366-462)||(6809910-6810005)
chr5 (365-462)||(7350655-7350752)
[»] chr2 (8 HSPs)
chr2 (363-462)||(29656983-29657082)
chr2 (365-567)||(35248521-35248725)
chr2 (363-497)||(31600978-31601113)
chr2 (363-490)||(35965077-35965206)
chr2 (363-496)||(34214867-34215002)
chr2 (363-443)||(34544578-34544658)
chr2 (363-497)||(4961612-4961747)
chr2 (363-443)||(30696667-30696747)
[»] chr6 (6 HSPs)
chr6 (398-462)||(256739-256803)
chr6 (363-497)||(20348809-20348943)
chr6 (363-431)||(2126900-2126968)
chr6 (397-497)||(29340696-29340798)
chr6 (397-497)||(29342121-29342223)
chr6 (398-462)||(253015-253079)
[»] scaffold0244 (1 HSPs)
scaffold0244 (363-441)||(4848-4926)
[»] scaffold0157 (1 HSPs)
scaffold0157 (397-462)||(14643-14708)


Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 59 - 721
Target Start/End: Complemental strand, 48538556 - 48537883
Alignment:
Q  59 tttatatattgaatttccctgacctttaactgtgtacatgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataatct 158  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48538556 tttatatattgaatttccctgacctttaactatgtacctgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataattt 48538457  T
Q  159 gaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgaccaaaacgtggctccgccact 255  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||| |||| ||    
T  48538456 gaggaggttcaaaatgaataaaaaagagtaatattgaaataatttaaaaactttgaggggatgcagctgcaccagctgaccaaaacttggcttcgccgct 48538357  T
Q  256 gtccgttatcctatccatactcactcagtagggatgggaaatcgaatctcattctgcctcaggtttgggtatctcacatcccatctctaaagtggata-- 353  Q
    ||| ||||||||| ||||||||| | |||| ||||||||||||||||||||| ||| ||| |||| || |||||||||||||||||  ||||||||||      
T  48538356 gtctgttatcctacccatactcatttagtaaggatgggaaatcgaatctcatcctgtctcgggttcggatatctcacatcccatcttcaaagtggatatt 48538257  T
Q  354 nnnnnnnnnaataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatg 453  Q
             ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48538256 tttttttataataaaaataaaagtattttgcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgatgatg 48538157  T
Q  454 gagaagagatgccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaa 553  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||| ||    
T  48538156 gagaagagatgccaagagtgtgaaatattgaaggagaaaaaagatggctataattaacaagtgttatctgaaagaccgagacgttgatcgtgtgattgaa 48538057  T
Q  554 atgatttagggtttacatttttatttataaaaaggtaataaa-------ttgatattcatgatgaatttgagtataagttcggacatgttttgaaatcgn 646  Q
    || ||||| ||||| |||||||| |||||||||| |||||||       || ||||||||||||||||||||||| ||||||||||| |||| ||||||     
T  48538056 ataatttaaggtttgcatttttagttataaaaagataataaattaattttttatattcatgatgaatttgagtatgagttcggacatattttaaaatcga 48537957  T
Q  647 nnnnnnctcaaacctacctaaaccaaatcaaagtggagaaaatccttcaaattcaatatgattctggcagatata 721  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  48537956 aaaaaactcaaacctacctaaaccaaatcaaagtggagaaaatccttcaaattcaatctgatt-tggcagatata 48537883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 2089724 - 2089605
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 235  Q
    |||||||||||||||||| |||| ||||||||||||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  2089724 ctggtgcaaagttataatttgagcaggttcaaaatgaataaaata-agaaatattggtctaaatttaaaactttgaggggatgcagctgcaccagctgac 2089626  T
Q  236 caaaacgtggctccgccactg 256  Q
    ||| |||||||||||||||||    
T  2089625 caatacgtggctccgccactg 2089605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 25155173 - 25155093
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    ||||||||||||| ||||||| ||||||||||| |||| |||||| ||||| | | |||| ||||||||| ||||||||||    
T  25155173 aataaaaataaaagtattttttagtcccgagcacaatgctgtaatgcattacccaacaaagagatgatgatgatcgatgac 25155093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 462
Target Start/End: Complemental strand, 48126010 - 48125912
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||| ||| |||||||||  || ||||  ||||||||||||||||| | |||||| |||||||||||||| ||||| ||||| || |||||||||    
T  48126010 aataaaaatgaaagtatttttcac-ccagagcgcaatgttgtaatacattaaccagcaaagagatgatgacgatcaatgactatgatgattgagaagaga 48125912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 14890906 - 14891041
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||||| ||||||||||||| |||   ||||||||||| ||||||| |||||| ||| |||| ||||||||  | ||| | ||||||||||||    
T  14890906 aataaaaataaaagtatttttcagtcc-gagtgcaatgttgtaatgcattatccagcaaagagacgatgccgatcgatagctatggtgatggagaagaga 14891004  T
Q  463 t--gccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
       | | ||| ||||| |||| |||||||||||||||    
T  14891005 gaggtcgagattgtgagatatggaaggagaaaagaga 14891041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 42729290 - 42729154
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa--ga 460  Q
    ||||||||||||| ||||||||||||| ||    ||||||||||| ||||||| |  ||| |||||||| ||||||||| | ||| | ||||||||  ||    
T  42729290 aataaaaataaaagtatttttcagtcctgaatgcaatgttgtaatgcattatccattaaagagatgatgtcgatcgatgtctatggtgatggagaagaga 42729191  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    ||  || ||||||||| |||| |||||||| ||||||    
T  42729190 gagaccgagagtgtgatatatggaaggagacaagaga 42729154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 8880193 - 8880327
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||| |||||| || |||| || ||||||   ||| ||||||| ||||||| |||||| ||| |||||| |||| ||||  || | ||||||||||||    
T  8880193 aataaatataaaagtaatttttagccccgagtgcaattttgtaatgcattatccagcaaagagacgatgactatcggtgactgtggtgatggagaagaga 8880292  T
Q  463 tgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
     | | ||| ||||| |||| |||||||||||||||    
T  8880293 agtcgagattgtgagatatggaaggagaaaagaga 8880327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 462
Target Start/End: Complemental strand, 18044511 - 18044411
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacat--tatctagcaaatagatgatgacgatcgatgaccatgataatggagaagag 461  Q
    |||||||||||| |||||| ||| ||||  || ||||||||||| |||  |||| |||||| |||||||||| ||||||||| ||| | | |||||||||    
T  18044511 ataaaaataaaagtattttgcagccccggacacaatgttgtaattcattatatccagcaaagagatgatgacaatcgatgactatggtgaaggagaagag 18044412  T
Q  462 a 462  Q
    |    
T  18044411 a 18044411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 14902884 - 14903019
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggaga--aga 460  Q
    ||||||||||||| ||||||||||| |||||   ||||| ||||| ||||||| |||||| ||| |||| || |||||  | ||  | |||||||  |||    
T  14902884 aataaaaataaaagtatttttcagt-ccgagtgcaatgtggtaatgcattatccagcaaagagacgatgccggtcgatagctattgtgatggagaagaga 14902982  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    || ||| ||| ||||| |||| |||||||||||||||    
T  14902983 gaggccgagattgtgagatatggaaggagaaaagaga 14903019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 481
Target Start/End: Complemental strand, 41477297 - 41477178
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa--ga 460  Q
    ||||||||||||| |||||| ||  | |||||  ||||||||||| |||| || || |||  |||||||  |||||||||| ||| ||||||||||  ||    
T  41477297 aataaaaataaaagtatttt-caacctcgagcgcaatgttgtaatgcattgtcaaggaaaaggatgatggagatcgatgactatggtaatggagaagaga 41477199  T
Q  461 gatgccaagagtgtgaaatat 481  Q
    || ||| ||||||||||||||    
T  41477198 gaggccgagagtgtgaaatat 41477178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 16820943 - 16820824
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 235  Q
    |||||||||||||||||| |||||||||||||||||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  16820943 ctggtgcaaagttataatttgaggaggttcaaaatgaataaaata-agaaatattggtctaaatttaaaactttgaggggatgcagctgcaccagctgac 16820845  T
Q  236 caaaacgtggctccgccactg 256  Q
    ||| |||||||||||||||||    
T  16820844 caatacgtggctccgccactg 16820824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 8545696 - 8545617
Alignment:
Q  363 aataaaaataaaaatatttttcagtccc-gagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatg 441  Q
    ||||||||||||| |||||||||| ||| |||| |||||||||||| ||||||| | |||| ||||||||||||| ||||    
T  8545696 aataaaaataaaagtatttttcagcccccgagcgtaatgttgtaatgcattatccaacaaagagatgatgacgatggatg 8545617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 397 - 566
Target Start/End: Original strand, 36274819 - 36274990
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagagatg--ccaagagtgtgaaatatcgaaggagaaaag 494  Q
    ||||| ||||||||||||| | |||||||||||| |||| | || |  ||| | || |||||||||    || ||||||||| |||| ||||||||||||    
T  36274819 aatgtcgtaatacattatccaacaaatagatgataacgaacaataattatggtgattgagaagagagagacctagagtgtgagatatggaaggagaaaag 36274918  T
Q  495 agatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaaatgatttagggtt 566  Q
     || | |||| || |  ||||||||||||||| ||| |||| ||||  |||||| | |||||||||||||||    
T  36274919 ggaggactatgataagtgagtgtcatctgaaagaccgagactttgactgtgtgagtgaaatgatttagggtt 36274990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 39379915 - 39379825
Alignment:
Q  372 aaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||||||| | ||| || ||||||||||| ||||||| | |||| |||||||| | ||| ||||| ||| | ||||||||||||    
T  39379915 aaaaatatttttcagcctcgaacacaatgttgtaatgcattatccaacaaagagatgatgtcaatcaatgactatggtgatggagaagaga 39379825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 35747507 - 35747461
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    ||||||||| ||||||||| |||||| |||||||| |||||||||||    
T  35747507 aatgttgtattacattatccagcaaagagatgatggcgatcgatgac 35747461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 16678917 - 16678798
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 235  Q
    |||||||||||||||||| ||||||||||||| |||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  16678917 ctggtgcaaagttataatttgaggaggttcaagatgaataaaata-agaaatattggtttaaatttaaaactttgaggggatgcagctgcaccagctgac 16678819  T
Q  236 caaaacgtggctccgccactg 256  Q
    ||| |||||||||||||||||    
T  16678818 caatacgtggctccgccactg 16678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 17653153 - 17653034
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 235  Q
    |||||||||||||||||| ||||||||||||| |||||||||| | || ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  17653153 ctggtgcaaagttataatttgaggaggttcaagatgaataaaata-agaaatattggtttaaatttaaaactttgaggggatgcagctgcaccagctgac 17653055  T
Q  236 caaaacgtggctccgccactg 256  Q
    ||| |||||||||||||||||    
T  17653054 caatacgtggctccgccactg 17653034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 364 - 563
Target Start/End: Original strand, 37217752 - 37217953
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataat--ggagaagag 461  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||| ||||||| |||||  ||||||||   ||||||| | ||| | ||   || |||||    
T  37217752 ataaaaataaaagtattttttagtcccgagcacaatgttgtaatgcattatccagcaaggagatgatggtaatcgatggctatggtgataaagaaaagag 37217851  T
Q  462 atgccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaaatgattta 561  Q
    | ||| ||||||||| |||| |||||||| ||||||   |||| ||    ||||||||| ||||||||| ||||  |||| |||| | ||||||||||||    
T  37217852 aggccgagagtgtgagatatggaaggagagaagagagaactatgatatgtgagtgtcatatgaaaaaccgagactctgattgtgttagtaaaatgattta 37217951  T
Q  562 gg 563  Q
    ||    
T  37217952 gg 37217953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 23475609 - 23475530
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    |||||||||||| |||||  |||   ||||||  |||||||||| ||||||||||||||||||||||||||||| |||||    
T  23475609 ataaaaataaaagtatttagcagcgtcgagcaatatgttgtaatgcattatctagcaaatagatgatgacgatcaatgac 23475530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 31345273 - 31345372
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||||| ||||||||| || |||||  |||| |||||| |||||| || |||| |||||||| ||||||||||| ||| | || |||||||||    
T  31345273 aataaaaataaaagtatttttcaatctcgagcgcaatgatgtaatgcattatatatcaaagagatgatggcgatcgatgactatggtgattgagaagaga 31345372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 462
Target Start/End: Original strand, 3773817 - 3773915
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||||||||| |||||| ||| |  ||||| ||||||||||| |||||||||||||| |||| ||||| | ||||||| ||| | | ||||||||||    
T  3773817 ataaaaataaaagtattttgcagccttgagcacaatgttgtaatgcattatctagcaaagagataatgacaaacgatgactatggtgaaggagaagaga 3773915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 35305724 - 35305663
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa 458  Q
    ||||||||||||||||||| | |||| ||||||||| |||||||||| ||||| ||||||||    
T  35305724 aatgttgtaatacattatccaacaaagagatgatgatgatcgatgactatgatgatggagaa 35305663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 3156835 - 3156903
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 431  Q
    |||||||||| ||  |||| |||| ||||||| |||||||||||||||||||| |||||| ||||||||    
T  3156835 aataaaaatagaagcatttgtcagccccgagcgtaatgttgtaatacattatccagcaaagagatgatg 3156903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 19440322 - 19440277
Alignment:
Q  398 atgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  19440322 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgac 19440277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 30999768 - 30999832
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagag 461  Q
    |||||||||||  |||||| | |||| |||||||||||||| ||||| ||||| |||||||||||    
T  30999768 aatgttgtaatgtattatccaacaaaaagatgatgacgatcaatgactatgatgatggagaagag 30999832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 11473023 - 11472958
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||||||||  |||||| | |||| |||||||||||||||||||| ||| | || |||||||||    
T  11473023 aatgttgtaatgtattatccaacaaagagatgatgacgatcgatgactatggtgatagagaagaga 11472958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 23533916 - 23533871
Alignment:
Q  398 atgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    |||||||||| ||||||| ||||||||||||||||| ||| |||||    
T  23533916 atgttgtaatgcattatccagcaaatagatgatgacaatcaatgac 23533871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 40335943 - 40335878
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||||||||| |||||| | |||| |||||||   |||||||||| ||||| ||||||||||||    
T  40335943 aatgttgtaatatattatccaacaaagagatgatagtgatcgatgactatgatgatggagaagaga 40335878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 526
Target Start/End: Original strand, 40890109 - 40890271
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcat-aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagag 461  Q
    ||||||||||||| |||||||||  |||||  || ||||||||||| ||||||| || ||||||||||| |||||| ||||| ||||| |||||||||||    
T  40890109 aataaaaataaaagtatttttcaaccccga--atcaatgttgtaatgcattatccagtaaatagatgataacgatcaatgactatgatgatggagaagag 40890206  T
Q  462 atgccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaa 526  Q
    | | |  |||||||| | || |||||||||||||||   |||| || |||||||||||| |||||    
T  40890207 aggtcgggagtgtgagagatggaaggagaaaagagagaactatgataaacgagtgtcatatgaaa 40890271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 46868930 - 46869023
Alignment:
Q  89 tgtgtacatgcttggaagacttgctgtgtgtgaagtgacaagattaccgtctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaa 183  Q
    ||||||| |||||| |||||||   ||||||| ||||||||||| || | |||||||||||||||| | ||||||||||||||||||||||||||    
T  46868930 tgtgtacctgcttgtaagacttctggtgtgtgcagtgacaagatcacag-ctggtgcaaagttatattttgaggaggttcaaaatgaataaaaaa 46869023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 25484074 - 25484115
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaa 180  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  25484074 ctggtgcaaagttataatttgaggaggttcaaaatgaataaa 25484115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 25484446 - 25484489
Alignment:
Q  213 gggatgcagctgcaccagctgaccaaaacgtggctccgccactg 256  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  25484446 gggaagcagctgcaccagctgaccaatacgtggctccgccactg 25484489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 38347388 - 38347453
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||||||||||||||||||  ||| |||||||  ||||||||||| ||| | ||||||||||||    
T  38347388 aatgttgtaatacattatctaataaagagatgattgcgatcgatgactatggtgatggagaagaga 38347453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 493
Target Start/End: Original strand, 26207029 - 26207161
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggaga--aga 460  Q
    ||||||||||||| || |||||||||  |||   |||||||||||  ||||||||  ||| ||||||||||| |  ||| | ||||| |||||||  |||    
T  26207029 aataaaaataaaagtacttttcagtcgtgagttcaatgttgtaatgtattatctactaaagagatgatgacgttatatggctatgatgatggagaagaga 26207128  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaa 493  Q
    || ||| ||||||||| |||| | |||||||||    
T  26207129 gaggccgagagtgtgagatatgggaggagaaaa 26207161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 363 - 600
Target Start/End: Complemental strand, 33616462 - 33616220
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagag- 461  Q
    |||||||||| || |||||||||  |||||||| ||||||||||| ||||||| |||||| |||| ||||| ||||||| | ||| | || ||| ||||     
T  33616462 aataaaaatataagtatttttcatccccgagcacaatgttgtaatgcattatcgagcaaaaagattatgacaatcgatggctatggttatagagtagaga 33616363  T
Q  462 -atgccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaaatgattt 560  Q
     | ||| ||||||||| |||| || ||||||||||||   |||| || |  ||||||||| ||||| |   ||||  |||  |||||| | |||||||||    
T  33616362 aaggccgagagtgtgagatatggatggagaaaagagagaactatgataagtgagtgtcatatgaaatattaagactctgactgtgtgagtgaaatgattt 33616263  T
Q  561 agggtttacatttttatttataaaaa---ggtaataaattgat 600  Q
    |||||||  ||||||||||||| |||   ||||||||||||||    
T  33616262 agggttttgatttttatttatataaaaggggtaataaattgat 33616220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 2443238 - 2443119
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaactg---agggatgcagctgcaccagctgac 235  Q
    |||||||||||||||||| |||| | ||||||||||||||||| | || |||||| |  ||| || ||||||    ||| ||||||||||||||||||||    
T  2443238 ctggtgcaaagttataatttgagcaagttcaaaatgaataaaata-agaaatattagtctaaatttaaaactttgaaggaatgcagctgcaccagctgac 2443140  T
Q  236 caaaacgtggctccgccactg 256  Q
    ||| |||||||||||||||||    
T  2443139 caatacgtggctccgccactg 2443119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 495
Target Start/End: Original strand, 42907635 - 42907769
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaag--a 460  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||| ||||||  |||||| |||| ||||||||  | ||| ||| | || ||||||  |    
T  42907635 aataaaaataaaattattttttagatccgagcgtaatgttgtaatgcattattcagcaaagagataatgacgattaacgactatggtgattgagaagaaa 42907734  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaaga 495  Q
    || ||||||||||||| |||| |||||||||||||    
T  42907735 gaggccaagagtgtgagatatggaaggagaaaaga 42907769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 12075978 - 12075842
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaag--a 460  Q
    ||||||||||||| |||||||||  | |||||  | ||||||||| ||||||| | |||| |||||||||||||| ||| | ||| | |||||||||  |    
T  12075978 aataaaaataaaagtatttttcaacctcgagcgcattgttgtaatgcattatccaacaaagagatgatgacgatcaatggctatggtgatggagaagaca 12075879  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    ||  || ||||||||| |||| |||||||||||||||    
T  12075878 gagaccgagagtgtgagatatagaaggagaaaagaga 12075842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 562
Target Start/End: Complemental strand, 25265493 - 25265292
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaaga-- 460  Q
    ||||||||||||| ||||||| ||   |||||  ||||||||||| ||||||| |||||| | ||| || ||||| ||||| ||| | | | ||||||      
T  25265493 aataaaaataaaagtattttttagcttcgagcgcaatgttgtaatgcattatccagcaaagaaatgttggcgatcaatgactatggtgaagaagaagaaa 25265394  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaaatgattt 560  Q
    || ||| | ||||||| |||| |||||||||||||||   |||| || | ||| ||||||||||||||   ||||  |||| |||||| |||||||||||    
T  25265393 gaggccgaaagtgtgagatatggaaggagaaaagagagaactatgataagcgactgtcatctgaaaaattgagactctgattgtgtgagtaaaatgattt 25265294  T
Q  561 ag 562  Q
    ||    
T  25265293 ag 25265292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 7334532 - 7334394
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatg--ttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa-- 458  Q
    ||||||||||||| |||||||| | ||||| || ||||  ||||||| ||||||| | |||| |||  ||||||||||||| | ||| | ||||||||      
T  7334532 aataaaaataaaagtatttttctgccccgaacacaatgcgttgtaatgcattatccaacaaagagacaatgacgatcgatggctatggtgatggagaaaa 7334433  T
Q  459 gagatgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    |||| ||| ||| ||||| |||| |||||||||||||||    
T  7334432 gagaggccgagattgtgagatatggaaggagaaaagaga 7334394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 493
Target Start/End: Original strand, 37926314 - 37926441
Alignment:
Q  368 aaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaag--agatgc 465  Q
    |||||||| ||||||| ||||| ||||  ||||||||||| |||||||||||||| ||||  || |||| |||||| ||||| | | |||||  ||| |     
T  37926314 aaataaaagtattttttagtcctgagcgcaatgttgtaatgcattatctagcaaagagattttggcgattgatgactatgatgaagcagaagaaagaggt 37926413  T
Q  466 caagagtgtgaaatatcgaaggagaaaa 493  Q
    | ||||||||| |||| |||||||||||    
T  37926414 cgagagtgtgagatatggaaggagaaaa 37926441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 3505049 - 3505150
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa-gagatgccaagagtgtgaaatatcgaaggagaaaaga 495  Q
    ||||||||||| ||||||| || ||| ||||||| |||||||||||| ||||| || ||||| ||||  |  ||||||||| |||| ||||||||| |||    
T  3505049 aatgttgtaatgcattatccagtaaaaagatgattacgatcgatgactatgatgatcgagaaggagagactcagagtgtgagatatggaaggagaagaga 3505148  T
Q  496 ga 497  Q
    ||    
T  3505149 ga 3505150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 39085903 - 39085978
Alignment:
Q  365 taaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgat 440  Q
    ||||||||||| |||||||||||||| |    ||||||||||| ||||||| | |||| |||||| ||||||||||    
T  39085903 taaaaataaaagtatttttcagtcccaattgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgat 39085978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 8844133 - 8844075
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaa 422  Q
    ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||| ||||||    
T  8844133 ataaatataaaagtattttgcagtcccgagcgcaatgttgtaatgcattatccagcaaa 8844075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 8857097 - 8857039
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaa 422  Q
    ||||| |||||| |||||| |||||||||||  ||||||||||| ||||||| ||||||    
T  8857097 ataaatataaaagtattttgcagtcccgagcgcaatgttgtaatgcattatccagcaaa 8857039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 442
Target Start/End: Complemental strand, 9929514 - 9929436
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatga 442  Q
    |||||||||||  ||||||| |||| |||||  || ||||| || |||||||||| ||| |||||| ||||||||||||    
T  9929514 ataaaaataaatgtattttttagtctcgagcggaacgttgtgatgcattatctaggaaagagatgacgacgatcgatga 9929436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 53907020 - 53906966
Alignment:
Q  364 ataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctag 418  Q
    ||||||||||||||||||||||||| ||| || |||||  |||| ||||||||||    
T  53907020 ataaaaataaaaatatttttcagtctcgatcacaatgtcttaatgcattatctag 53906966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 3513974 - 3514035
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa 458  Q
    ||||||||||| ||||||| |||||| |||||||  ||||||||||| |||||  |||||||    
T  3513974 aatgttgtaatgcattatccagcaaaaagatgatttcgatcgatgactatgatggtggagaa 3514035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Complemental strand, 12505834 - 12505769
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||| ||||||| |||||| |||||| ||||||||||| | ||| | |||||| |||||    
T  12505834 aatgttgtaatgcattatccagcaaagagatgaagacgatcgatgtctatggtgatggagtagaga 12505769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 25299179 - 25299043
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||||| |||||||||| |  |||   ||| ||||||| ||||||| |||||| |||  |||||||||  |||| ||| | ||||||||||||    
T  25299179 aataaaaataaaagtatttttcagccttgagtgcaattttgtaatgcattatccagcaaaaagactatgacgatcagtgactatggtgatggagaagaga 25299080  T
Q  463 t--gccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
       | | ||| ||||| |||| |||||||||||||||    
T  25299079 gaagtcgagattgtgagatatggaaggagaaaagaga 25299043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 497
Target Start/End: Complemental strand, 43351676 - 43351580
Alignment:
Q  403 gtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa--gagatgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    ||||| |||||||||||||| |||||||| |||||||||   ||| | ||||||||  ||||| || ||||||||| |||  ||||||||| |||||    
T  43351676 gtaatgcattatctagcaaagagatgatggcgatcgatggttatggtgatggagaagagagataccgagagtgtgagataaggaaggagaagagaga 43351580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 20464478 - 20464365
Alignment:
Q  139 ctggtgcaaagttataatctgaggaggttcaaaatgaataaaaaagagtaatattggaataatttaaaaac--tga-gggatgcagctgcaccagctgac 235  Q
    |||||||||||||||||| |||| ||||||||||||||||||| | |  ||||||||  ||| || |||||  ||| |||||||||||||||||||||||    
T  20464478 ctggtgcaaagttataatttgagcaggttcaaaatgaataaaata-aaaaatattggtttaaatttaaaactttgaggggatgcagctgcaccagctgac 20464380  T
Q  236 caaaacgtggctccg 250  Q
    ||| |||||||||||    
T  20464379 caatacgtggctccg 20464365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 29664714 - 29664849
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggaga--aga 460  Q
    ||||||||||||| ||||||| |  |||||||  ||||||||||| ||||||| |||||  |||||||||||||||||||| ||| | || ||||  |||    
T  29664714 aataaaaataaaagtattttttac-cccgagcgcaatgttgtaatgcattatccagcaacaagatgatgacgatcgatgactatggtgattgagaagaga 29664812  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    || ||||||||||| | |||| ||| |||||||||||    
T  29664813 gaggccaagagtgttagatattgaaagagaaaagaga 29664849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 366 - 600
Target Start/End: Original strand, 35583862 - 35584100
Alignment:
Q  366 aaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa--gagat 463  Q
    |||||||||| |||||||||| | |||||  ||||||||||| ||||||| | |||| |||||| ||||||||||||| ||| | | ||||||  |||||    
T  35583862 aaaaataaaagtatttttcagccacgagcgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgatgactatggtgaaggagaagggagat 35583961  T
Q  464 gccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaaatgatttagg 563  Q
    ||| ||||||||  ||||  |||||||||| |||   |  | || || ||||| ||||||||| ||  ||||  |||  ||||||  |||||||||||||    
T  35583962 gccgagagtgtgggatatgaaaggagaaaacagagaacagtgataaatgagtgacatctgaaagactgagactctgactgtgtgagcaaaatgatttagg 35584061  T
Q  564 gtttacatttttatt--tataaaaaggtaataaattgat 600  Q
    ||||   ||| ||||  ||||||| ||||||||||||||    
T  35584062 gtttgagtttctatttatataaaagggtaataaattgat 35584100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 38972664 - 38972763
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||| ||| ||||||||||||||||||  ||| | | ||| |||||||||| ||||||| |||||| ||||||| | ||| ||||||||||||||    
T  38972664 aataaaaattaaagtatttttcagtcccgagcgcaatatagaaatgcattatctaggaaatagacgatgacaatcgatggctatggtaatggagaagaga 38972763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 365 - 496
Target Start/End: Complemental strand, 16311619 - 16311486
Alignment:
Q  365 taaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagagat- 463  Q
    |||||| ||| ||||||||||| |||||||  |||||||||||  |||||| | |||| |||||||||||||||||| | ||| | ||||||||||||      
T  16311619 taaaaacaaacatatttttcagccccgagcgcaatgttgtaatgaattatcaaacaaagagatgatgacgatcgatggctatggtgatggagaagagaga 16311520  T
Q  464 -gccaagagtgtgaaatatcgaaggagaaaagag 496  Q
     | | ||| ||||| |||| ||||||||||||||    
T  16311519 ggtcgagattgtgagatatggaaggagaaaagag 16311486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 462
Target Start/End: Original strand, 6809910 - 6810005
Alignment:
Q  366 aaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||| || ||||||| ||  |||||| |||||||||||| ||||||| |||||| |||||||||||||| ||  | ||||| ||||||||||||    
T  6809910 aaaaatagaagtatttttaagctccgagcgtaatgttgtaatgcattatccagcaaa-agatgatgacgatcaattgctatgatgatggagaagaga 6810005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 7350752 - 7350655
Alignment:
Q  365 taaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||| ||||||||||  ||||||  ||||||||||| ||||||| ||   | |||||||  ||||||||| | ||| | ||||||||||||    
T  7350752 taaaaataaaagtatttttcagctccgagcgcaatgttgtaatgcattatccagggtagagatgatatcgatcgatggctatggtgatggagaagaga 7350655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 363 - 462
Target Start/End: Complemental strand, 29657082 - 29656983
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||  ||| |||||||||| |||||||  ||||||||||| ||||||| || ||| |||||||||||||||||||| || || ||||||||||||    
T  29657082 aataaaaactaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaggaaagagatgatgacgatcgatgactataatgatggagaagaga 29656983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 365 - 567
Target Start/End: Complemental strand, 35248725 - 35248521
Alignment:
Q  365 taaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaa--gaga 462  Q
    |||||||||||  ||||| ||| | |||||| ||| ||||||| |||||||||| ||| ||| |||| |||||||| || ||| | ||||||||  ||||    
T  35248725 taaaaataaaagaattttccaggcacgagcacaattttgtaatgcattatctaggaaagagacgatgtcgatcgattactatggtgatggagaagagaga 35248626  T
Q  463 tgccaagagtgtgaaatatcgaaggagaaaagagatggctataattaacgagtgtcatctgaaaaacctagacgttgatcgtgtgattaaaatgatttag 562  Q
     ||||| ||||||| |||| |||||||| ||||||   ||||||| | |||||||||| ||||| ||  ||||  ||   |||||| | |||||||||||    
T  35248625 ggccaaaagtgtgagatatggaaggagataagagagaactataataagcgagtgtcatttgaaagactgagactctgtctgtgtgagtgaaatgatttag 35248526  T
Q  563 ggttt 567  Q
    |||||    
T  35248525 ggttt 35248521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 31601113 - 31600978
Alignment:
Q  363 aataaaaataaaaatatttttc-agtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagag 461  Q
    ||||||||||||| |||||||  ||  |||||  |||||||||||| ||||||| | |||| |||||||||||||| ||||| ||| | || ||||||||    
T  31601113 aataaaaataaaagtatttttttagctccgagtgtaatgttgtaatgcattatccaacaaagagatgatgacgatcaatgactatggtgattgagaagag 31601014  T
Q  462 atgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
    | ||||| ||||||| |||| |||||| | ||||||    
T  31601013 aggccaatagtgtgagatatggaaggatagaagaga 31600978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 363 - 490
Target Start/End: Original strand, 35965077 - 35965206
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggaga--aga 460  Q
    ||||||||| ||  |||||||||| |||||||| ||||||||||| |||| || |  | | ||||||||| |||||||||| ||||| |||||||  |||    
T  35965077 aataaaaatgaacgtatttttcagccccgagcacaatgttgtaatgcattgtccatgataaagatgatgaagatcgatgactatgatgatggagaagaga 35965176  T
Q  461 gatgccaagagtgtgaaatatcgaaggaga 490  Q
    |||| | ||||||||| |||| ||||||||    
T  35965177 gatgacgagagtgtgagatatggaaggaga 35965206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 363 - 496
Target Start/End: Complemental strand, 34215002 - 34214867
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggaga--aga 460  Q
    ||||| ||||||| ||||||||||||  || |  ||||||||||| ||||||| |||||| ||||||||| |||| ||||| ||| | ||  |||  |||    
T  34215002 aataataataaaagtatttttcagtcttgaacgcaatgttgtaatgcattatccagcaaagagatgatgatgatctatgactatggtgattaagaagaga 34214903  T
Q  461 gatgccaagagtgtgaaatatcgaaggagaaaagag 496  Q
    || ||| | ||||||| |||||||||||||||||||    
T  34214902 gaggccgaaagtgtgagatatcgaaggagaaaagag 34214867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 34544658 - 34544578
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    ||||||||||||| |||||||||| |||||||  ||||||||||| ||||||| | |||| |||||| ||||||| |||||    
T  34544658 aataaaaataaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaacaaagagatgacgacgatcaatgac 34544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 4961747 - 4961612
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||||| |||||||||| ||  |||  |||||||||| || | ||| |||||| |||||||||| ||||||||| ||| | ||||||||||||    
T  4961747 aataaaaataaaagtatttttcagcccaaagcgcaatgttgtaacacct-atccagcaaagagatgatgacaatcgatgactatggtgatggagaagaga 4961649  T
Q  463 tgc--caagagtgtgaaatatcgaaggagaaaagaga 497  Q
         | ||||||||| |||| |||||||||||||||    
T  4961648 gagatcgagagtgtgagatatggaaggagaaaagaga 4961612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 30696667 - 30696747
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgac 443  Q
    ||||||||||||| |||||||||| |  ||||| |||||||||||||| |||  |||||| |||| | |||||||||||||    
T  30696667 aataaaaataaaagtatttttcagccttgagcaaaatgttgtaatacactattcagcaaagagataacgacgatcgatgac 30696747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 256803 - 256739
Alignment:
Q  398 atgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||| ||| | ||||||||||||    
T  256803 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactatggtgatggagaagaga 256739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 20348809 - 20348943
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||||| ||||| |||  ||||||   |||||||||||||||||||||   || |||| ||| |||||||||   ||| | ||||| ||||||    
T  20348809 aataaaaataaaagtatttgtcaaccccgagtgcaatgttgtaatacattatctaatgaaaagattatggcgatcgatggttatggtgatggaaaagaga 20348908  T
Q  463 tgccaagagtgtgaaatatcgaaggagaaaagaga 497  Q
     || || ||||||| |||| |||||||||||||||    
T  20348909 ggcaaaaagtgtgagatatggaaggagaaaagaga 20348943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 2126968 - 2126900
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatg 431  Q
    ||||||||||||| ||||||| ||||  ||||  |||||||||| ||||||||||||||| ||||||||    
T  2126968 aataaaaataaaagtattttttagtcgagagcgcaatgttgtaacacattatctagcaaagagatgatg 2126900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 29340696 - 29340798
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaaga--gatgccaagagtgtgaaatatcgaaggagaaaag 494  Q
    ||||||||||| ||||||| | |||| ||||| || |||| |||||  ||| ||| ||||||||  || ||| ||||||||| |||||||||||||||||    
T  29340696 aatgttgtaatgcattatccaacaaagagatgttggcgattgatgattatggtaaaggagaagaaagaggccgagagtgtgagatatcgaaggagaaaag 29340795  T
Q  495 aga 497  Q
    |||    
T  29340796 aga 29340798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 397 - 497
Target Start/End: Complemental strand, 29342223 - 29342121
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaag--agatgccaagagtgtgaaatatcgaaggagaaaag 494  Q
    ||||||||||| ||||||| | |||| ||||| || ||||||||||  ||| ||| |||||||  ||| ||| ||||||||| ||||| |||||||||||    
T  29342223 aatgttgtaatgcattatccaacaaagagatgttggcgatcgatgattatggtaaaggagaagaaagaggccgagagtgtgagatatcaaaggagaaaag 29342124  T
Q  495 aga 497  Q
    |||    
T  29342123 aga 29342121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 253079 - 253015
Alignment:
Q  398 atgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    |||||||||| ||||||| ||||||||||| |||| |||| ||||| ||| | ||||||||||||    
T  253079 atgttgtaattcattatccagcaaatagataatgatgatcaatgactatggtgatggagaagaga 253015  T

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Target: scaffold0244 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 4926 - 4848
Alignment:
Q  363 aataaaaataaaaatatttttcagtcccgagcataatgttgtaatacattatctagcaaatagatgatgacgatcgatg 441  Q
    ||||||||||||| ||||||||| |  |||||  ||||||||||| ||||||| |||||| |||||||| |||||||||    
T  4926 aataaaaataaaagtatttttcaatttcgagcgaaatgttgtaatgcattatccagcaaagagatgatggcgatcgatg 4848  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 14643 - 14708
Alignment:
Q  397 aatgttgtaatacattatctagcaaatagatgatgacgatcgatgaccatgataatggagaagaga 462  Q
    ||||||||||| ||||||| |||||| |||||| ||||||||||| | ||| | |||||| |||||    
T  14643 aatgttgtaatgcattatccagcaaagagatgaagacgatcgatgtctatggtgatggagtagaga 14708  T

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