View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14054_low_4 (Length: 548)
Name: NF14054_low_4
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_low_4 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 285 - 545
Target Start/End: Complemental strand, 4086425 - 4086163
Alignment:
| Q |
285 |
caaatttaaaccattcaagttgatcaatctaatggcttacgatattccgtacatgacttctcttgttccctctttctttccttgtacgtttgtgatcaca |
384 |
Q |
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| T |
4086425 |
caaatctagaccattctagttgatcaatctaatggcttacgatattccgtacatgagttctcttgttccctttttc----catgtacgttagtgatcaca |
4086330 |
T |
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| Q |
385 |
caaaacaaatttgcaaagtacccgct------tcttcaacaacaacaacgaataataataacttagttgacatcatgtcatggcatattcaattgaatca |
478 |
Q |
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| T |
4086329 |
caaaacatatttgcaaagtacccgctgctgcttcttcaacaacaacaacgaataataataacttagttgacatcatgtcatggcatattcaattgaatca |
4086230 |
T |
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| Q |
479 |
tttatcaattttgattgtctattcaataggaaaagtgtaaccccttttctcgcttcctaccctttgc |
545 |
Q |
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| T |
4086229 |
tttatcaattttaattttctattcaataggaaaagtgtaaccccttttctcgcttcctaccttttgc |
4086163 |
T |
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Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 45733105 - 45732987
Alignment:
| Q |
15 |
agtttattcttgccaacatgtaaataactgttccttatacggttaatgttttccatgtaaaacttataaccac-ttaacacataaatactccatcacctt |
113 |
Q |
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| T |
45733105 |
agtttattcgtgtcaacatgtaaataacggttccttatatggttaattttttccatgtaaaaattataatcactttaacacataaataccccatcacctt |
45733006 |
T |
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| Q |
114 |
agacactactttgtaattc |
132 |
Q |
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| T |
45733005 |
aggcactactttgtgattc |
45732987 |
T |
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Target: scaffold0016 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 408 - 507
Target Start/End: Original strand, 45974 - 46074
Alignment:
| Q |
408 |
gcttcttcaacaacaacaacgaataataataacttagttgacatcatgtcatggca-tattcaattgaatcatttatcaattttgattgtctattcaata |
506 |
Q |
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| T |
45974 |
gcttgttcaacaacaacgatgaataataataacttagttgaaatcatgtcatggcactattcaattgaatcatttagcaattttgatttttcattcaata |
46073 |
T |
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| Q |
507 |
g |
507 |
Q |
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| T |
46074 |
g |
46074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 6106923 - 6107035
Alignment:
| Q |
249 |
atccgttgacatcagat-taattcaaaagacttacatcaaatttaaaccattcaagttgatcaatctaatggcttacgatattccgtacatgacttctct |
347 |
Q |
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| T |
6106923 |
atccgttgacaccaggtgtaagtcaaaagacttacatcaaatctagaccattcaaattaatcaatctaatggcttacaatatttcgtatgtgagttctca |
6107022 |
T |
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| Q |
348 |
tgttccctctttc |
360 |
Q |
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| T |
6107023 |
tgatccctttttc |
6107035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 40139551 - 40139485
Alignment:
| Q |
67 |
ccatgtaaaacttataaccactt-aacacataaatactccatcaccttagacactactttgtaattc |
132 |
Q |
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| T |
40139551 |
ccatgtaaaacttataaccattttaacgcataaataccccatcaccttacgcactactttgtgattc |
40139485 |
T |
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