View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14054_low_7 (Length: 448)

Name: NF14054_low_7
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14054_low_7
NF14054_low_7
[»] chr8 (3 HSPs)
chr8 (9-279)||(2558807-2559077)
chr8 (275-432)||(2559130-2559287)
chr8 (328-432)||(2551548-2551651)
[»] chr4 (5 HSPs)
chr4 (139-231)||(25642261-25642353)
chr4 (162-231)||(18997671-18997740)
chr4 (126-224)||(10169172-10169270)
chr4 (171-224)||(29277840-29277893)
chr4 (116-152)||(5334873-5334909)
[»] chr2 (1 HSPs)
chr2 (162-228)||(35246872-35246938)
[»] chr1 (1 HSPs)
chr1 (117-170)||(34049411-34049464)
[»] chr7 (1 HSPs)
chr7 (11-93)||(21602398-21602479)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 2558807 - 2559077
Alignment:
Q  9 agcatagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcagcaacggaagtcgacaggtaaaatga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  2558807 agcatagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcaacatcggaagtcgacaggtaaaatga 2558906  T
Q  109 atttcatgtcgttttctagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattag 208  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2558907 atttcatgtcgttttccagacatggaaacatatgatgagggataagtgaagtaataattgaaatagaaggaatatataatcgattaaggaaggtcattag 2559006  T
Q  209 acaaatagttaacaaagcttaatacgttctctctgatctttgtttcatcacttacactacacctacgacag 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2559007 acaaatagttaacaaagcttaatacgttctctctgatctttgtttcatcacttacactacacctactacag 2559077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 275 - 432
Target Start/End: Original strand, 2559130 - 2559287
Alignment:
Q  275 gacaggttatggtattgcacgtgtctcgttagatttgatgttttattttttataaaaccggcatacttactattatacgaaggaccgaaaaatccttcgt 374  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2559130 gacaggttatggtattgcatgtgtctcgttagatttgatgttttatttttgataaaaccggcatacttactattatacgaaggactgaaaaatccttcgt 2559229  T
Q  375 attactagtccaagtgaagacttgcaatgaagtctgtaggaggatctaaggttgatag 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2559230 attactagtccaagtgaagacttgcaatgaagtctgtaggaggatctaaggttgatag 2559287  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 432
Target Start/End: Original strand, 2551548 - 2551651
Alignment:
Q  328 aaaaccggcatacttactattatacgaaggaccgaaaaatccttcgtattactagtccaagtgaagacttgcaatgaagtctgtaggaggatctaaggtt 427  Q
    ||||| |||||||||||| |||||  ||||||| |||||| |||| ||| |||||||||||||||||||| ||||||||| ||||||||||| |||| ||    
T  2551548 aaaactggcatacttactgttatataaaggacctaaaaattcttcttatcactagtccaagtgaagacttccaatgaagtatgtaggaggat-taagatt 2551646  T
Q  428 gatag 432  Q
    |||||    
T  2551647 gatag 2551651  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 25642261 - 25642353
Alignment:
Q  139 tatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagcttaat 231  Q
    |||| ||||||||| ||  |||||||||||||||| ||| |  |||||||||||||||||| |  ||||||||||||||| |||| |||||||    
T  25642261 tatgttgagggatatgttgagtaataattgaaataaaaggaggatataatcgattaaggaatgatattagacaaatagttcacaaggcttaat 25642353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 18997671 - 18997740
Alignment:
Q  162 ataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagcttaat 231  Q
    |||||||||||| ||| | ||||||||||||| |||||||  ||||||||||||||| |  |||||||||    
T  18997671 ataattgaaataaaaggagtatataatcgattcaggaaggatattagacaaatagttcatgaagcttaat 18997740  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 10169172 - 10169270
Alignment:
Q  126 agacatggaaacatatgatgagggataagtgaagtaataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaa 224  Q
    ||||||| |||||||  || ||||| |  ||||| |||||||||||||| || | |||||||| |||  |||||||||||||||| | |||||| ||||    
T  10169172 agacatgaaaacatacaataagggacagttgaaggaataattgaaataggaggagtatataattgatctaggaaggtcattagacgattagttatcaaa 10169270  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 29277893 - 29277840
Alignment:
Q  171 atagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaa 224  Q
    ||||| ||| |||||| |||||||||||||| ||||||| || |||||||||||    
T  29277893 atagatgaagtatatactcgattaaggaagggcattagataattagttaacaaa 29277840  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 5334909 - 5334873
Alignment:
Q  116 gtcgttttctagacatggaaacatatgatgagggata 152  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  5334909 gtcgttttctagacatggaaacgtataatgagggata 5334873  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 35246872 - 35246938
Alignment:
Q  162 ataattgaaatagaagaaatatataatcgattaaggaaggtcattagacaaatagttaacaaagctt 228  Q
    |||| |||||||| ||||||||||||||||||||||||||  |||| | || |||||||| ||||||    
T  35246872 ataactgaaataggagaaatatataatcgattaaggaaggaaattaaataattagttaacgaagctt 35246938  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 34049411 - 34049464
Alignment:
Q  117 tcgttttctagacatggaaacatatgatgagggataagtgaagtaataattgaa 170  Q
    |||||| ||||||||||||||||| |||||||||||||||| || ||| |||||    
T  34049411 tcgtttactagacatggaaacatacgatgagggataagtgaggttatatttgaa 34049464  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 21602479 - 21602398
Alignment:
Q  11 catagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcagcaacggaagt 93  Q
    ||||||||  |||||||| | ||||| || ||| |||| ||||| ||| ||||||||  ||||||||||||||||||||||||    
T  21602479 catagggttaggtttgcaatcatatt-aattatccggtcatatgccatggaatcaataatctattttgctcagcaacggaagt 21602398  T

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