View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14054_low_9 (Length: 340)
Name: NF14054_low_9
Description: NF14054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14054_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 34401133 - 34400834
Alignment:
| Q |
20 |
agacaggaacaccacttccaggaggaggaggcattccgggacgaggcggtccctgcattccaggatgaggaggaggtcctctcatcatctgtccaggagg |
119 |
Q |
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| T |
34401133 |
agacaggaacaccacttccaggaggaggaggcattccgggacgaggcggtccctgcattccaggatgaggaggaggtcctctcatcatctgtccaggagg |
34401034 |
T |
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| Q |
120 |
aggtgggcccataggtctctgtccaaactgaggaggcggcatggaaaattgtggcggaggaggaccaccaggtctcggaggagcaaattgcggtggcgga |
219 |
Q |
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| T |
34401033 |
aggtgggcccataggtctctgtccaaactgaggaggcggcatggaaaattgtggcggaggaggaccaccaggtctcggaggagcaaattgcggtggcgga |
34400934 |
T |
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| Q |
220 |
ccacctggtctcggaggaccacctggcataccgggatatggcatctgaccaggcggtggacgcataaccggcggaccaccgggatacgaaaccggaggac |
319 |
Q |
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| T |
34400933 |
ccacctggtctcggaggaccacctggcataccgggatatggcatctgaccaggcggtggacgcataaccggcggaccaccgggatacgaaaccggaggac |
34400834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 40174474 - 40174638
Alignment:
| Q |
22 |
acaggaacaccacttccaggaggaggaggcattccgggacgaggcggtccctgcattccaggatgaggagga------ggtcctctcatcatctgtccag |
115 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||| |||||||||| |||||| |||| |
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| T |
40174474 |
acaggaacaccacttccaggaggaggaggcataccaggacgaggcggaggctgcattccaggccgaggaggagcaggaggtcctctcaccatctgaccag |
40174573 |
T |
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| Q |
116 |
gaggaggtgggcccataggtctctgtccaaactgaggaggcggcatggaaaattgtggcggagga |
180 |
Q |
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| T |
40174574 |
gaggaggtggccccattggtctctgcccatactgaggaggtggcataccaaattgtggtggagga |
40174638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 40174744 - 40174781
Alignment:
| Q |
274 |
ggtggacgcataaccggcggaccaccgggatacgaaac |
311 |
Q |
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| T |
40174744 |
ggtggacgcataacaggcggaccaccaggatacgaaac |
40174781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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