View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14055_high_10 (Length: 267)
Name: NF14055_high_10
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14055_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 30136744 - 30136511
Alignment:
| Q |
10 |
ataattctaactgaaggtgattttttgcagcacgaaagaatgcttaatggaattgtgtttagtgttgtcaagaaagaagactttacagcttcaagtcgaa |
109 |
Q |
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| T |
30136744 |
ataattctaactgaaggtgattttttgcagcacgaaagaatgcttaatggaattgtgtttagtgttgtcaagaaagaagactttacagcttcaagtcgaa |
30136645 |
T |
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| Q |
110 |
gtcatgactacgatagttataacaatgaagttgctgagtgtctccacattgaatgtccagagaaggagatggatgatgctgctagctcagcttccgaaaa |
209 |
Q |
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| T |
30136644 |
gtcatgactacgatagttataacaatgaagttgctgagtgtctccacattgaatgtccagagaaggagatggatgatgctgctagctcagcttccgaaaa |
30136545 |
T |
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| Q |
210 |
cggagataatgaatccccagcagctaggacctta |
243 |
Q |
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| T |
30136544 |
cggagataacgaatccccagcagctaggacctta |
30136511 |
T |
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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 39132834 - 39133024
Alignment:
| Q |
17 |
taactgaaggtgattttttgcagcacgaaagaatgcttaatggaattgtgtttagtgttgtcaagaaagaagactttacagcttcaagtcgaagtcatga |
116 |
Q |
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|||||||||||||| ||||||||| || ||||| | ||||||||||||||||| ||||||||||||||||||||| ||| |||||||| | |||||||| |
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| T |
39132834 |
taactgaaggtgatcttttgcagcctgagagaatccataatggaattgtgtttaatgttgtcaagaaagaagacttaacaccttcaagtaggagtcatga |
39132933 |
T |
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| Q |
117 |
ctacgatagttataacaatgaagttgctgagtgtctccacattgaatgtccagagaaggagatggatgatgctgctagctcagcttccgaaaacggagat |
216 |
Q |
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| T |
39132934 |
ttatgatagt---------gaaattgctgagtgtctccaaattgaatgtccagggaaggagatggatgatgctgctagctcagcttcagaaaacggagat |
39133024 |
T |
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