View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14055_high_3 (Length: 575)

Name: NF14055_high_3
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14055_high_3
NF14055_high_3
[»] chr1 (10 HSPs)
chr1 (8-279)||(14591256-14591526)
chr1 (447-561)||(14592340-14592453)
chr1 (345-449)||(14591592-14591696)
chr1 (380-442)||(25017767-25017829)
chr1 (380-449)||(35950988-35951057)
chr1 (381-442)||(911647-911708)
chr1 (381-422)||(1048626-1048667)
chr1 (212-279)||(11240621-11240688)
chr1 (512-549)||(14581690-14581727)
chr1 (190-264)||(38674271-38674347)
[»] chr7 (9 HSPs)
chr7 (112-279)||(49024233-49024401)
chr7 (380-442)||(22491279-22491341)
chr7 (377-442)||(41085458-41085523)
chr7 (380-442)||(25749762-25749823)
chr7 (381-432)||(29273635-29273686)
chr7 (190-279)||(22643943-22644034)
chr7 (382-437)||(3765285-3765339)
chr7 (23-73)||(49024476-49024526)
chr7 (382-435)||(45224351-45224404)
[»] chr6 (4 HSPs)
chr6 (380-442)||(24164919-24164981)
chr6 (397-437)||(11416506-11416546)
chr6 (381-442)||(29794647-29794708)
chr6 (384-436)||(6271157-6271209)
[»] chr4 (6 HSPs)
chr4 (380-449)||(46308316-46308385)
chr4 (380-437)||(4728939-4728996)
chr4 (212-279)||(42857606-42857673)
chr4 (383-436)||(31522596-31522649)
chr4 (213-279)||(11671804-11671872)
chr4 (384-436)||(50300893-50300945)
[»] chr5 (4 HSPs)
chr5 (380-442)||(43229551-43229613)
chr5 (384-436)||(41697790-41697842)
chr5 (213-279)||(24905394-24905460)
chr5 (384-436)||(4921047-4921099)
[»] chr8 (4 HSPs)
chr8 (382-442)||(39565618-39565678)
chr8 (380-436)||(41312621-41312677)
chr8 (202-279)||(31666246-31666325)
chr8 (212-256)||(31251881-31251925)
[»] chr3 (7 HSPs)
chr3 (202-279)||(37516066-37516145)
chr3 (212-279)||(24346150-24346219)
chr3 (212-279)||(28255156-28255225)
chr3 (212-279)||(43884983-43885052)
chr3 (381-429)||(31543055-31543103)
chr3 (382-437)||(30676107-30676162)
chr3 (212-278)||(50675607-50675675)
[»] chr2 (2 HSPs)
chr2 (380-442)||(13039827-13039889)
chr2 (213-279)||(11738624-11738692)
[»] scaffold0294 (1 HSPs)
scaffold0294 (382-442)||(13972-14032)
[»] scaffold0100 (1 HSPs)
scaffold0100 (222-275)||(44477-44530)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 14591256 - 14591526
Alignment:
Q  8 gagatgaagtacggaagagaggaataatgtgtgggtcctatcaaaagattctttctaccccttgaagcagcgaagaaatggggaaaaagaccaagtgtat 107  Q
    |||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  14591256 gagaagaagtaggggagagaggaataatgtgtgg-tcctatcaaaagattctttctaccccttgaagcagcgaagaaatggggaagaagagcaagtgtat 14591354  T
Q  108 catgcttttacaatttagtctttatagaaaaatgtgcaattcaaaaaatttcagtttttatgtgtaaaataagtcaatgattggggtattttgataattt 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||  ||    
T  14591355 cgtgcttttacaatttagtctttatagaaaaatgtgcaattcaaaaaatttcactttttatgtgtaaaataagtcaatggtaggggtattttgatacatt 14591454  T
Q  208 taataataatcaacacttctctcttatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  14591455 taataataatcaacacttctctcttatatttctttcatatctcttttatatcaaacaatacatcaaatctac 14591526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 14592340 - 14592453
Alignment:
Q  447 tgtatgtactgtgttacaaacttgaaacagtacgtgccaaagtgtgattgaataaaagaggactgcaaatgtgtataaaaatagtttttaaaatttaagg 546  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14592340 tgtatgtattgtgttacaaacttgaaacaatacgtgccaaagtgtgattgaataaaagaggactacaaatgtgtataaaaatagtttttaaaatttaagg 14592439  T
Q  547 tacatatgtgttgag 561  Q
     ||||||||||||||    
T  14592440 -acatatgtgttgag 14592453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 14591592 - 14591696
Alignment:
Q  345 gcacaacttctctgctaaaccaaacacacccataaggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagcctttat 444  Q
    |||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  14591592 gcacaacttctctcataaaccaaacacacccttagggtatgtttgtttcaagggaaagaaagtgatgaggagagaaagatgagggaaaaaaagcctttat 14591691  T
Q  445 gttgt 449  Q
    |||||    
T  14591692 gttgt 14591696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 25017767 - 25017829
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  25017767 ggtatgtttgtttcaaaggaaagaaagtgatgaggagagaaaggtgagggaaggaaagacttt 25017829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 35951057 - 35950988
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagcctttatgttgt 449  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||| ||||||    
T  35951057 ggtatgtttgtttcaagggaaagaaagtgatgaggaaagaaaggttagggaaagaaaatctttctgttgt 35950988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 911708 - 911647
Alignment:
Q  381 gtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||    
T  911708 gtatatttgtttcaaaggaaagaaagtgatgaggagagaaaggtgatggaaagaaagacttt 911647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 1048667 - 1048626
Alignment:
Q  381 gtatgtttgtttcaagggaaagaaagtgatgaggagagaaag 422  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  1048667 gtatatttgtttcaaaggaaagaaagtgatgaggagagaaag 1048626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 11240621 - 11240688
Alignment:
Q  212 aataatcaacacttctctcttatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||||||||||||| ||||||| |||| ||||| |||||  |||||  |||||| ||||||    
T  11240621 aataatcaacacttctctcttctatttctctcatctctctcttataacaaacaacacatcatatctac 11240688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 549
Target Start/End: Original strand, 14581690 - 14581727
Alignment:
Q  512 caaatgtgtataaaaatagtttttaaaatttaaggtac 549  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  14581690 caaatgtgtataaatatagtttttaaaattcaaggtac 14581727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 38674347 - 38674271
Alignment:
Q  190 ggggtattttgataattttaataataatcaacacttctctct--tatatttctttcatatctcttttatactaaaca 264  Q
    ||||||||||| || |||||| |||||||||||||||| |||  | ||||||||| |||||||| || ||| |||||    
T  38674347 ggggtattttggtacttttaaaaataatcaacacttctttcttctctatttcttttatatctctcttctaccaaaca 38674271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 49024401 - 49024233
Alignment:
Q  112 cttttacaatttagtctttatagaaaaatgtgcaattcaaaaaattt-cagtttttatgtgtaaaataagtcaatgattggggtattttgataattttaa 210  Q
    ||||||||||||| ||||||| ||||||||||||| |||||| |||| || ||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  49024401 cttttacaatttaatctttattgaaaaatgtgcaactcaaaacattttcattttttatgtgtaaaataagtcaatggtaggggtattttgatacttttaa 49024302  T
Q  211 taataatcaacacttctctcttatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||||    
T  49024301 taataatcaacacttctctcttatatttctttcatatctcttttatatcaaataatacatcaaatctac 49024233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 22491279 - 22491341
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  22491279 ggtatgtttgtttcaagggaaagaaagtgatgacgagagaaaggtgaaggaaagaaagccttt 22491341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 41085523 - 41085458
Alignment:
Q  377 taaggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||| ||||    
T  41085523 taaggtatgtttgtttcaaaggaaagaaagtgacgaggagagaaaggtggtggaaagaaagacttt 41085458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 25749762 - 25749823
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  25749762 ggtatgtttgtttcgagggaa-gaaagtgatgaggagagaaaggtgagggaaggaaagacttt 25749823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 29273686 - 29273635
Alignment:
Q  381 gtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaa 432  Q
    ||||||||||||||||||||||||||||| |||||||||||| || ||||||    
T  29273686 gtatgtttgtttcaagggaaagaaagtgacgaggagagaaagttgggggaaa 29273635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 22644034 - 22643943
Alignment:
Q  190 ggggtattttgataattttaataataatcaacacttctctcttat--atttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||| || || ||| |||||||||||||||| |||| |  |||||||| |||||||| || ||| ||||| ||||||||||||||    
T  22644034 ggggtattttggtacttctaaaaataatcaacacttctttcttctctatttcttttatatctctcttctaccaaacaatacatcaaatctac 22643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 437
Target Start/End: Original strand, 3765285 - 3765339
Alignment:
Q  382 tatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaag 437  Q
    ||||||||||| || ||||||||||||| |||||||||||||||| ||||||||||    
T  3765285 tatgtttgttttaaaggaaagaaagtga-gaggagagaaaggtgaaggaaagaaag 3765339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 49024526 - 49024476
Alignment:
Q  23 agagaggaataatgtgtgggtcctatcaaaagattctttctaccccttgaa 73  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||| |||||    
T  49024526 agagaggaataatatgtgggttctatcaaaagattctttctccccattgaa 49024476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 45224404 - 45224351
Alignment:
Q  382 tatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaa 435  Q
    |||||||||||| | ||||||| ||||  |||||||||||| ||||||||||||    
T  45224404 tatgtttgtttctaaggaaagatagtggggaggagagaaagttgagggaaagaa 45224351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 24164919 - 24164981
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24164919 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaaaccttt 24164981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 11416546 - 11416506
Alignment:
Q  397 ggaaagaaagtgatgaggagagaaaggtgagggaaagaaag 437  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  11416546 ggaaagaaagtgatgaggagagaaaggtaagggaaagaaag 11416506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 29794647 - 29794708
Alignment:
Q  381 gtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    ||||||||||||||| ||||||||||||| ||||| | |||| | |||||||||||| ||||    
T  29794647 gtatgtttgtttcaaaggaaagaaagtgaagaggaaaaaaagattagggaaagaaagtcttt 29794708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 6271157 - 6271209
Alignment:
Q  384 tgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 436  Q
    ||||||||| || ||||||||||  | |||||||||||| |||||||||||||    
T  6271157 tgtttgttttaaaggaaagaaagccaagaggagagaaagttgagggaaagaaa 6271209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 46308385 - 46308316
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagcctttatgttgt 449  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||| ||||||    
T  46308385 ggtatgtttgtttcaagggaaagaaagtggtgaggagagaaaggtgatggagagaaagtctttctgttgt 46308316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 4728939 - 4728996
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaag 437  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||    
T  4728939 ggtatgtttgttttaaaggaaagaaagtgatgaagagagaaaggtgagggaaaaaaag 4728996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 42857673 - 42857606
Alignment:
Q  212 aataatcaacacttctctcttatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||| || ||||| ||||||||||||||    
T  42857673 aataatcaacacttctctcttctatttctctcatctctctcttacaccaaacaatacatcaaatctac 42857606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 31522649 - 31522596
Alignment:
Q  383 atgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 436  Q
    ||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||    
T  31522649 atgtttgtttcaatggaaagaaagtgacgtggaaagaaaggtgagggaaagaaa 31522596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 11671804 - 11671872
Alignment:
Q  213 ataatcaacacttctctcttat--atttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    |||| ||||||||||||||| |  |||||| |||| |||||||||||| ||||| | ||||||||||||    
T  11671804 ataaacaacacttctctcttctctatttctctcatttctcttttataccaaacaattcatcaaatctac 11671872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 50300893 - 50300945
Alignment:
Q  384 tgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 436  Q
    |||||||||| | ||||||| ||||  |||||||||||| |||||||||||||    
T  50300893 tgtttgtttctaaggaaagatagtggagaggagagaaagatgagggaaagaaa 50300945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 43229613 - 43229551
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||| ||||    
T  43229613 ggtatgtttgtttcaaaggaaagaaagtgatgaggaaagacaggtgatggaaagaaagacttt 43229551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 41697842 - 41697790
Alignment:
Q  384 tgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 436  Q
    ||||||||| || ||||||||||||| |||||||||||| |||||||||||||    
T  41697842 tgtttgttttaaaggaaagaaagtgaagaggagagaaagttgagggaaagaaa 41697790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 24905394 - 24905460
Alignment:
Q  213 ataatcaacacttctctcttatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    |||||||||||||||||||| ||||||| || | ||||| || ||| ||||| ||||||||||||||    
T  24905394 ataatcaacacttctctcttttatttctctcttctctctcttttaccaaacaatacatcaaatctac 24905460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 4921047 - 4921099
Alignment:
Q  384 tgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 436  Q
    ||||||||| || ||||||||||||| ||| |||||||| |||||||||||||    
T  4921047 tgtttgttttaaaggaaagaaagtgaagagtagagaaagttgagggaaagaaa 4921099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 442
Target Start/End: Original strand, 39565618 - 39565678
Alignment:
Q  382 tatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    |||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||| ||||    
T  39565618 tatgtttgtttcaagggaaagatagtgaggaggagagaaaggttggggaaagaaagacttt 39565678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 41312621 - 41312677
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaa 436  Q
    |||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||    
T  41312621 ggtatgtttgtttcaatggaaagaaagtgttgaggaaagaaaggtgagtgaaagaaa 41312677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 31666325 - 31666246
Alignment:
Q  202 taattttaataataatcaacacttctctct--tatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||  ||||||||||||||||||||  | ||||||| |||| | |||||||||| ||||| ||||||||||||||    
T  31666325 taattttataaataatcaacacttctctctcttctatttctctcatctttcttttataccaaacaatacatcaaatctac 31666246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 31251881 - 31251925
Alignment:
Q  212 aataatcaacacttctctcttatatttctttcatatctcttttat 256  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||||    
T  31251881 aataatcaacacttctctcttctatttctctcatctctctcttat 31251925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 37516145 - 37516066
Alignment:
Q  202 taattttaataataatcaacactt--ctctcttatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||  ||||||||||||||  ||||||| ||||||| |||||| |||||||||| ||||| ||||||||||||||    
T  37516145 taattttataaataatcaacacttttctctcttctatttctctcatatttcttttatacaaaacaatacatcaaatctac 37516066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 24346150 - 24346219
Alignment:
Q  212 aataatcaacacttctctct--tatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||||||||||||  | ||||||| |||||||||| |||||| |||||  |||||||||||||    
T  24346150 aataatcaacacttctctctcttctatttctctcatatctctcttataccaaacaacacatcaaatctac 24346219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 28255156 - 28255225
Alignment:
Q  212 aataatcaacacttctctct--tatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||||||||||||  | ||||||| |||||||||| |||||| |||||  |||||||||||||    
T  28255156 aataatcaacacttctctctcttctatttctctcatatctctcttataccaaacaacacatcaaatctac 28255225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 43885052 - 43884983
Alignment:
Q  212 aataatcaacacttctctct--tatatttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    ||||||||||||||||||||  | ||||||| |||||||||| |||||| |||||  |||||||||||||    
T  43885052 aataatcaacacttctctctcttctatttctctcatatctctcttataccaaacaacacatcaaatctac 43884983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 31543055 - 31543103
Alignment:
Q  381 gtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgaggg 429  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| |||||||    
T  31543055 gtatgtttgtttcaatggaaagaaagtgacgaggaaagaaatgtgaggg 31543103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 30676162 - 30676107
Alignment:
Q  382 tatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaag 437  Q
    ||||||| |||||||||||| | ||||| ||||||||||||||  |||||||||||    
T  30676162 tatgtttatttcaagggaaaaatagtgaggaggagagaaaggttggggaaagaaag 30676107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 50675607 - 50675675
Alignment:
Q  212 aataatcaacacttctct--cttatatttctttcatatctcttttatactaaacattacatcaaatcta 278  Q
    ||||||||||| ||||||  ||| ||||||| || | ||||||||||||||||||  ||||||||||||    
T  50675607 aataatcaacatttctctatcttctatttctctcttctctcttttatactaaacaacacatcaaatcta 50675675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 13039889 - 13039827
Alignment:
Q  380 ggtatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    ||||||||||||| || ||||||||||||||||||| | |||||||||||||| |||| ||||    
T  13039889 ggtatgtttgttttaaaggaaagaaagtgatgaggaaaaaaaggtgagggaaataaagacttt 13039827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 11738692 - 11738624
Alignment:
Q  213 ataatcaacacttctctcttat--atttctttcatatctcttttatactaaacattacatcaaatctac 279  Q
    |||| ||||||||||||||| |  |||||| |||| |||||||||||| ||||| | ||||||||||||    
T  11738692 ataaacaacacttctctcttctctatttctctcatttctcttttataccaaacaatccatcaaatctac 11738624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 14032 - 13972
Alignment:
Q  382 tatgtttgtttcaagggaaagaaagtgatgaggagagaaaggtgagggaaagaaagccttt 442  Q
    |||||||||||||||||||||  ||||| ||||||||||||||  ||||||||||| ||||    
T  14032 tatgtttgtttcaagggaaaggtagtgaggaggagagaaaggttggggaaagaaagacttt 13972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 44530 - 44477
Alignment:
Q  222 acttctctcttatatttctttcatatctcttttatactaaacattacatcaaat 275  Q
    ||||||||||| |||||||||||| ||||| ||| || ||||| ||||||||||    
T  44530 acttctctcttctatttctttcatctctctcttacaccaaacaatacatcaaat 44477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University