View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14055_high_5 (Length: 415)
Name: NF14055_high_5
Description: NF14055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14055_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 42960554 - 42960153
Alignment:
| Q |
1 |
gagcattgaatagtaaaatagaaactaacaagtaacatgcatagaagtgatttttcctttcatgataaaccagattgggcagctctcaacaatcccacct |
100 |
Q |
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| T |
42960554 |
gagcattgaatagtaaaatagaaactaacaagtaatatgcatagaagtaatttttcatttcatgataaaccagattgggcagctctcaacaatcccacct |
42960455 |
T |
|
| Q |
101 |
aaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattgaagcatttaagggaggattcatcttatcaaaagttgcta |
200 |
Q |
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| T |
42960454 |
aaacaaagatcagcagaatccattaaagcttttgtgaagaacaaaaaagacattccaattgaagcatttaagggaggattcatcttatcaaaagttgcta |
42960355 |
T |
|
| Q |
201 |
atccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcg |
300 |
Q |
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| T |
42960354 |
atccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgctgttaccttcaactacttcagtcacccttacgatcttcatcg |
42960255 |
T |
|
| Q |
301 |
ctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaac |
400 |
Q |
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| T |
42960254 |
ctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaatctcactttgtgtgaaaaacaaactacagaacaacttcttaac |
42960155 |
T |
|
| Q |
401 |
aa |
402 |
Q |
| |
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|| |
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| T |
42960154 |
aa |
42960153 |
T |
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Back To:
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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 357
Target Start/End: Original strand, 5504339 - 5504537
Alignment:
| Q |
159 |
ttgaagcatttaagggaggattcatcttatcaaaagttgctaatccatggtcaacaggtgatctcaaattgatcaacacaaatgtggatgacaaccctgc |
258 |
Q |
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|||||||||| |||||||| || |||| || ||||||| | | | |||||| |||||| ||||| ||| ||||||| |||||| |||| || ||||| |
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| T |
5504339 |
ttgaagcattcaagggaggctttgtcttgtccaaagttggcagtgcttggtcagtaggtgagctcaagttggtcaacaccaatgtgaatgaaaatcctgc |
5504438 |
T |
|
| Q |
259 |
tgttaccttcaactacttcagtcacccttacgatcttcatcgctgtgtcgaaggaatccggttagcaacaaaagttgtccagtcacagcacttcacaaa |
357 |
Q |
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|||||||||||||||||||||||| || |||||| | | ||||| |||||||| ||| | | || | ||||| ||||||||| | ||||||||||| |
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| T |
5504439 |
tgttaccttcaactacttcagtcatccatacgatttaaagcgctgcgtcgaagggatcagcatggccattaaagtagtccagtcagaacacttcacaaa |
5504537 |
T |
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